FMO11428.5prime Sequence
1132 bp (1011 high quality bases) assembled on 2011-12-09
> FMO11428.5prime
CAGTCGACATGAGTATGTCGCGCGGCGGCAACACAACTCTGGACTTGCAG
CCGCTCCTGGCGGAGAGCGATGTCGGAAACAGGGAGCTGGAGGAGAAGAT
GGGCGGATCGGCGGATCGGTCATCGCTGCTCGATGGATCCGGTTCGAAGG
AGCTGAGTCACCGGGAACGCGAGGACTCGGCGTTGTTCGTCAAGAAGATC
GGGAGCGCCTTGTTCTATGGCTTGTCCTCCTTCATGATTACGGTGGTAAA
CAAGACGGTGCTTACCTCCTACCACTTCCCCTCGTTCCTGTTCCTCAGCC
TCGGGCAACTTACTGCTAGCATTGTGGTCCTGGGCATGGGCAAGCGCCTG
AAATTGGTGAACTTTCCCCCTCTGCAGAGGAATACCTTCGCCAAGATCTT
TCCGCTGCCACTGATATTTCTGGGAAACATGATGTTTGGACTGGGTGGCA
CAAAAACCTTGAGTCTGCCCATGTTCGCAGCCCTACGACGCTTCTCTATC
CTGATGACCATGCTGCTGGAGCTCAAGATCCTGGGACTGCGACCTTCGAA
TGCGGTTCAGGTCAGCGTATACGCAATGATCGGTGGAGCGCTGCTGGCCG
CCTCTGATGATCTGTCCTTCAACATGAGGGGCTACATCTATGTGATGATC
ACTAACGCCTTGACCGCCTCGAATGGCGTATATGTGAAGAAAAAACTCGA
CACCTCGGAGATCGGAAAGTACGGCCTAATGTACTACAACTCGCTGTTTA
TGTTTCTGCCTGCCCTGACCCTCAACTATGTTACAGGGAATCTAGATCAG
GCGCTGAACTTTGAACAATGGAATGACTCAGTGTTTGTGGTGCAGTTCCT
GCTCAGTTGCGTTATGGGTTTCATCCTATCGTACAGCACCATCCTGTGCA
CGCAATTCAACTCCGGCGCTGACCTCCACAATTGTGGGATGCCTGAAAAA
CATCTGCGTAACATATCTGGGCCATGTTCATTGAGGCGACTACGTCTTCT
CGTGCTCACCTGTATTGGGATCAACATCACGCGCTGCAGTCTGGCTCTAA
CGTAACCTCTCACTTTTCGGCCGAACCGATCTCCGAATAAACAAGGAAAC
CACTTGCCACAACCCGCGTCGAGAAATGTCCC
FMO11428.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:19:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32174-RC | 3871 | CG32174-RC | 216..1330 | 9..1125 | 5000 | 97.2 | Plus |
| frc-RB | 3871 | CG3874-RB | 216..1330 | 9..1125 | 5000 | 97.2 | Plus |
| frc-RA | 1609 | CG3874-RA | 216..1330 | 9..1125 | 5000 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:19:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17431955..17432975 | 1029..9 | 4855 | 99.2 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:19:23 has no hits.
FMO11428.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-09 10:06:11 Download gff for
FMO11428.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32174-RC | 211..1286 | 9..1084 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:47:38 Download gff for
FMO11428.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| frc-RA | 216..1291 | 9..1084 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:19:02 Download gff for
FMO11428.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| frc-RA | 216..1291 | 9..1084 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:19:02 Download gff for
FMO11428.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17431955..17432975 | 9..1029 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:47:38 Download gff for
FMO11428.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17425055..17426075 | 9..1029 | 99 | | Minus |
