FMO11429.5prime Sequence
914 bp (914 high quality bases) assembled on 2011-12-09
> FMO11429.5prime
CAGTCGACATGTCGGGCGATGTGCAGCCGCGTAAGCGCAAGGATAAGCGC
CGAAAACGCGATGATCGCAAGTCCGAGGGCGATGTGACTGTTCTGCGTCA
GTCCAGTTTTCAAGATGACGACGAATCTTCGCACGGCGTTCACATTACAA
AGATGGGAAACGAAGATCTCCACCTGCATGTGCACCACGATCACGGAACT
GGCGGTCACTGGTGCGCCAAGATTATATTCTTCGCCCTGATGGCAGTGCT
CCTCGGTTTGGTGGGTCTGATCATCATGGAGAATCGCGGACTGGAGGATC
TGGACACTCCTCTGTCGGAGTCTAGGTTCTCGAAAGTTTTTGATGGCTGG
GTGGACGAACATCGAGATGAGCATGATGGTCACGATGTGCAGGAACCCTC
GGGAGAGGCGTTAGATGATCACGATGAACACGACGACCATGATGATCATG
AAGACGAAGACGAAGAGCCCCTCACAGAAGAGTTAGAAGAAGAACTGGAG
GAAGAGGAAGAGCCAACTGAGGAGGATGAGCCAGCGGCAGATGAAGAATA
TGAGGAGGATGAAGATGAGGAGAACAATGCGGGTGAAAACATAACTGCCG
AGGATGCGGAGGAGGAGGAAGAGGAGGAGGATAACGATGATGAAGGCACC
GTAGAGGCAACTGTAGAAGCTACCACTGAAGCCACTACGGAAGCCACTGG
CGAATATGAAGCTGAAAGAAGATGATGAGGACGAAGCAGCAGCAGATGAT
GATGCAGTAGAGTCCACTGAAGCGCCGCTCTCGAAAGCTGAGGAGCAGGA
AGATGATGAGGATGAGGATGAGGAAGAGCAAGAGATCGAAGAATCAGTAG
AGCCGGAAAGATCCCAATATGCGGCACAAAGTGCTTCCGGCAAAGATAAT
AATGACGACGACGA
FMO11429.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:19:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Asph-RJ | 3197 | CG8421-RJ | 119..1023 | 9..914 | 4475 | 99.7 | Plus |
| Asph-RI | 3986 | CG8421-RI | 119..1023 | 9..914 | 4475 | 99.7 | Plus |
| Asph-RH | 2783 | CG8421-RH | 119..1023 | 9..914 | 4475 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:19:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16112194..16112530 | 458..795 | 1640 | 99.7 | Plus |
| 2R | 25286936 | 2R | 16111739..16111926 | 113..300 | 940 | 100 | Plus |
| 2R | 25286936 | 2R | 16111983..16112141 | 301..459 | 795 | 100 | Plus |
| 2R | 25286936 | 2R | 16112587..16112707 | 794..914 | 575 | 98.3 | Plus |
| 2R | 25286936 | 2R | 16111500..16111554 | 60..114 | 275 | 100 | Plus |
| 2R | 25286936 | 2R | 16110620..16110671 | 9..60 | 260 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:19:31 has no hits.
FMO11429.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-09 10:06:12 Download gff for
FMO11429.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Asph-RJ | 128..1039 | 1..913 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:47:42 Download gff for
FMO11429.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Asph-RH | 111..1022 | 1..913 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:19:06 Download gff for
FMO11429.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Asph-RH | 111..1022 | 1..913 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:19:06 Download gff for
FMO11429.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16112196..16112530 | 460..795 | 99 | -> | Plus |
| 2R | 16112589..16112706 | 796..913 | 98 | | Plus |
| 2R | 16111741..16111926 | 115..300 | 100 | -> | Plus |
| 2R | 16111983..16112141 | 301..459 | 100 | -> | Plus |
| 2R | 16110612..16110671 | 1..60 | 93 | -> | Plus |
| 2R | 16111501..16111554 | 61..114 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:47:42 Download gff for
FMO11429.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11998117..11998176 | 1..60 | 93 | -> | Plus |
| arm_2R | 11999006..11999059 | 61..114 | 100 | -> | Plus |
| arm_2R | 11999246..11999431 | 115..300 | 100 | -> | Plus |
| arm_2R | 11999488..11999646 | 301..459 | 100 | -> | Plus |
| arm_2R | 11999701..12000035 | 460..795 | 99 | -> | Plus |
| arm_2R | 12000094..12000211 | 796..913 | 98 | | Plus |
