FMO11431.5prime Sequence
530 bp (530 high quality bases) assembled on 2011-12-09
> FMO11431.5prime
CAGTCGACATGGCATTCAACTTTGGTCACCTCCTCATCGCCGGCCTCGTG
GCCTTGTCCGCCGTGTCCTCGGAGACCATCCAGCTGCAGCCCACTCAGGG
CATCCTCATCCCCGCCCCGCTGGCCGAGAACATCCGTGTGTCGCGTGCCG
CCTACGGAGGATACGGCGCTGCCCCAGCCGCCCCATCGTACTCCGCCCCA
GCCGCTCCCGCTGCCCAGGCCTACTCTGCTCCCGCTGCCCCAGCCTACTC
CGCACCCGCTGCTCCCGCCTACTCCGCACCCGCTGCTCCTGCCTACTCTG
CTCCCGCTGCCCCAGCTTACTCTGCCCCAGCCGCACCAGCTTACTCCGCA
CCCGCCTCCATTCCGTCGCCGCCGTGCCCCAAGAACTACCTGTTCAGCTG
CCAGCCCTCCCTGCAGCCCGTGCCCTGCTCCGCCCCAGCTCAGTCCTACG
GATCCGCCGGTGCCTACTCCCAGTACGTGCCCCAGTACGCCGTGCCCTTC
GTCCGCGAACTTGCAAGCTTTCTAGACCAT
FMO11431.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:19:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vm26Ab-RB | 636 | CG9046-RB | 63..566 | 9..512 | 2520 | 100 | Plus |
| Vm26Ab-RA | 625 | CG9046-RA | 63..566 | 9..512 | 2520 | 100 | Plus |
| Vm34Ca-RA | 491 | CG9271-RA | 191..371 | 300..477 | 310 | 79.1 | Plus |
| Vm26Ab-RB | 636 | CG9046-RB | 256..337 | 274..355 | 230 | 85.4 | Plus |
| Vm26Ab-RB | 636 | CG9046-RB | 328..409 | 202..283 | 230 | 85.4 | Plus |
| Vm26Ab-RA | 625 | CG9046-RA | 256..337 | 274..355 | 230 | 85.4 | Plus |
| Vm26Ab-RA | 625 | CG9046-RA | 328..409 | 202..283 | 230 | 85.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:19:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5957066..5957569 | 9..512 | 2520 | 100 | Plus |
| 2L | 23513712 | 2L | 5957261..5957389 | 228..356 | 360 | 85.3 | Plus |
| 2L | 23513712 | 2L | 5957285..5957413 | 204..332 | 360 | 85.3 | Plus |
| 2L | 23513712 | 2L | 13411261..13411392 | 477..346 | 300 | 81.8 | Minus |
| 2L | 23513712 | 2L | 5959936..5960031 | 470..375 | 255 | 84.4 | Minus |
| 2L | 23513712 | 2L | 5957259..5957340 | 274..355 | 230 | 85.4 | Plus |
| 2L | 23513712 | 2L | 5957331..5957412 | 202..283 | 230 | 85.4 | Plus |
Blast to na_te.dros performed 2014-11-27 20:19:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TART-A | 13424 | TART-A 13424bp | 10408..10496 | 367..281 | 108 | 63 | Minus |
FMO11431.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-09 10:06:13 Download gff for
FMO11431.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vm26Ab-RA | 55..570 | 1..517 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:47:51 Download gff for
FMO11431.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vm26Ab-RA | 55..570 | 1..517 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:19:11 Download gff for
FMO11431.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vm26Ab-RA | 55..570 | 1..517 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:19:11 Download gff for
FMO11431.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5957058..5957573 | 1..517 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:47:51 Download gff for
FMO11431.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5957058..5957573 | 1..517 | 98 | | Plus |
