FMO11435.5prime Sequence
1071 bp (1018 high quality bases) assembled on 2011-12-09
> FMO11435.5prime
CAGTCGACATGTCTTTATTCGGAGCGTTGATGGGTGATTTCGACGACGAT
CTCGGCCTTATGAACAACCACATGAACCACACTATGAACGCGATGAACAT
GCAGATGCGCTCGATGAATCGCCTGATGAACAGCTTTATGCCCGATCCCT
TCATGCAGGTCTCGCCCTTTGACCAGGGATTCCAGCAGAACGCTCTCATG
GAGCGTCCGCAGATGCCGGCCATGCCAGCCATGGGCCTCTTCGGCATGCC
CATGATGCCAAACTTTAATCGCCTGTTGAACGCTGATATTGGTGGCAATT
CAGGCGCATCCTTCTGCCAGAGCACCGTGATGACCATGTCATCGGGTCCC
GATGGGCGTCCTCAGATCTACCAGGCCAGCACTAGTACCAAAACAGGACC
GGGAGGCGTTCGTGAGACCCGCAGGACGGTGCAGGACTCGCGCACTGGGG
TGAAGAAGATGGCCATTGGTCATCACATCGGCGAGCGGGCACACATTATT
GAGAAAGAGCAGGACATGCGCTCAGGACAACTGGAGGAGCGCCAGGAGTT
CATTAATCTGGAGGAGGGAGAAGCCGAGCAGTTTGACAGGGAGTTTACAT
CGCGCGCTAGTCGCGGAGCGGTGCAGTCAAGACATCATGCTGGTGGCATG
CAGGCCATCATGCCCGCCCGTCCAGCGGCACACACCTCGACGTTGACCAT
TGAGCCAGTGGAGGACGACGACGACGATGATGATGACTGTGTAATCCAGG
AGCAGCAACCGGTTCGCTCCTCCGCGGGCCGCCATTATTCCAGTGCGCCA
ACGGCACCGCAGAACAGTGGCAACATTGCAACAGCAGCAGCACCAACACC
AACATCCTCGCCAACAACCTACGAAACAAGCACGGAAACAACAATAACTA
CGTGAGCTCTCGTCGTTCGTACCTGCGAAATGGGCATGGGCATAGCCTGG
CCACGCCGCGCCGCCCACTAAGACACCCCCATCCTCGGCCGCTGGCTACG
TGTCACTTCTCAAGAAAATTGCGTATTTATAAATCGCCGTACCACCCGCA
AGGCAAGCTTTCTAAGAACAA
FMO11435.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:18:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mlf-RH | 1745 | CG8295-RH | 103..1149 | 9..1052 | 4980 | 98.8 | Plus |
Mlf-RE | 2112 | CG8295-RE | 109..1155 | 9..1052 | 4980 | 98.8 | Plus |
Mlf-RD | 1806 | CG8295-RD | 109..1114 | 9..1011 | 4895 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:18:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 15938447..15938979 | 817..285 | 2665 | 100 | Minus |
2R | 25286936 | 2R | 15939037..15939257 | 285..65 | 1105 | 100 | Minus |
2R | 25286936 | 2R | 15937696..15937882 | 1000..815 | 775 | 97.9 | Minus |
2R | 25286936 | 2R | 15939910..15939965 | 64..9 | 280 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 20:18:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2789..2898 | 795..907 | 206 | 67.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6680..6833 | 753..907 | 186 | 62.9 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1075..1181 | 795..899 | 186 | 68.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2289..2410 | 775..893 | 179 | 67.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2406..2485 | 829..908 | 174 | 71.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2337..2443 | 799..908 | 172 | 67.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6739..6851 | 795..907 | 168 | 63.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1454..1593 | 728..867 | 167 | 64.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6814..6925 | 795..909 | 145 | 63.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2439..2520 | 815..898 | 144 | 68.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6731..6797 | 829..898 | 144 | 71.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2308..2394 | 813..901 | 142 | 66.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6769..6884 | 795..907 | 141 | 61.9 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1065..1164 | 813..908 | 140 | 64.7 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1096..1160 | 795..856 | 129 | 73.1 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1102..1179 | 806..882 | 126 | 67.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2490..2549 | 821..882 | 125 | 69.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6827..6919 | 790..879 | 123 | 63.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2368 | 832..893 | 121 | 66.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 882..908 | 714..740 | 117 | 92.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2598..2666 | 799..864 | 112 | 70.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 5628..5696 | 823..900 | 109 | 65.4 | Plus |
BS | 5142 | BS BS 5142bp | 2087..2115 | 826..854 | 109 | 86.2 | Plus |
FMO11435.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-09 10:06:08 Download gff for
FMO11435.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mlf-RE | 109..1161 | 9..1058 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:47:20 Download gff for
FMO11435.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mlf-RE | 109..1161 | 9..1058 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:18:48 Download gff for
FMO11435.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mlf-RE | 109..1161 | 9..1058 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:18:48 Download gff for
FMO11435.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 15937679..15937879 | 818..1014 | 96 | <- | Minus |
2R | 15938447..15938978 | 286..817 | 100 | <- | Minus |
2R | 15939037..15939257 | 65..285 | 100 | <- | Minus |
2R | 15939910..15939965 | 9..64 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:47:20 Download gff for
FMO11435.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 11825184..11825384 | 818..1014 | 96 | <- | Minus |
arm_2R | 11825952..11826483 | 286..817 | 100 | <- | Minus |
arm_2R | 11826542..11826762 | 65..285 | 100 | <- | Minus |
arm_2R | 11827415..11827470 | 9..64 | 100 | | Minus |