Clone FMO11435 Report

Search the DGRC for FMO11435

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:114
Well:35
Vector:pMK33-CFH-BD
Associated Gene/TranscriptMlf-RE
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11435.5prime Sequence

1071 bp (1018 high quality bases) assembled on 2011-12-09

> FMO11435.5prime
CAGTCGACATGTCTTTATTCGGAGCGTTGATGGGTGATTTCGACGACGAT
CTCGGCCTTATGAACAACCACATGAACCACACTATGAACGCGATGAACAT
GCAGATGCGCTCGATGAATCGCCTGATGAACAGCTTTATGCCCGATCCCT
TCATGCAGGTCTCGCCCTTTGACCAGGGATTCCAGCAGAACGCTCTCATG
GAGCGTCCGCAGATGCCGGCCATGCCAGCCATGGGCCTCTTCGGCATGCC
CATGATGCCAAACTTTAATCGCCTGTTGAACGCTGATATTGGTGGCAATT
CAGGCGCATCCTTCTGCCAGAGCACCGTGATGACCATGTCATCGGGTCCC
GATGGGCGTCCTCAGATCTACCAGGCCAGCACTAGTACCAAAACAGGACC
GGGAGGCGTTCGTGAGACCCGCAGGACGGTGCAGGACTCGCGCACTGGGG
TGAAGAAGATGGCCATTGGTCATCACATCGGCGAGCGGGCACACATTATT
GAGAAAGAGCAGGACATGCGCTCAGGACAACTGGAGGAGCGCCAGGAGTT
CATTAATCTGGAGGAGGGAGAAGCCGAGCAGTTTGACAGGGAGTTTACAT
CGCGCGCTAGTCGCGGAGCGGTGCAGTCAAGACATCATGCTGGTGGCATG
CAGGCCATCATGCCCGCCCGTCCAGCGGCACACACCTCGACGTTGACCAT
TGAGCCAGTGGAGGACGACGACGACGATGATGATGACTGTGTAATCCAGG
AGCAGCAACCGGTTCGCTCCTCCGCGGGCCGCCATTATTCCAGTGCGCCA
ACGGCACCGCAGAACAGTGGCAACATTGCAACAGCAGCAGCACCAACACC
AACATCCTCGCCAACAACCTACGAAACAAGCACGGAAACAACAATAACTA
CGTGAGCTCTCGTCGTTCGTACCTGCGAAATGGGCATGGGCATAGCCTGG
CCACGCCGCGCCGCCCACTAAGACACCCCCATCCTCGGCCGCTGGCTACG
TGTCACTTCTCAAGAAAATTGCGTATTTATAAATCGCCGTACCACCCGCA
AGGCAAGCTTTCTAAGAACAA

FMO11435.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:18:40
Subject Length Description Subject Range Query Range Score Percent Strand
Mlf-RH 1745 CG8295-RH 103..1149 9..1052 4980 98.8 Plus
Mlf-RE 2112 CG8295-RE 109..1155 9..1052 4980 98.8 Plus
Mlf-RD 1806 CG8295-RD 109..1114 9..1011 4895 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:18:35
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15938447..15938979 817..285 2665 100 Minus
2R 25286936 2R 15939037..15939257 285..65 1105 100 Minus
2R 25286936 2R 15937696..15937882 1000..815 775 97.9 Minus
2R 25286936 2R 15939910..15939965 64..9 280 100 Minus
Blast to na_te.dros performed 2014-11-27 20:18:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2789..2898 795..907 206 67.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6680..6833 753..907 186 62.9 Plus
roo 9092 roo DM_ROO 9092bp 1075..1181 795..899 186 68.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2289..2410 775..893 179 67.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2406..2485 829..908 174 71.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2337..2443 799..908 172 67.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6739..6851 795..907 168 63.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1454..1593 728..867 167 64.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6814..6925 795..909 145 63.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2439..2520 815..898 144 68.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6731..6797 829..898 144 71.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2308..2394 813..901 142 66.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6769..6884 795..907 141 61.9 Plus
roo 9092 roo DM_ROO 9092bp 1065..1164 813..908 140 64.7 Plus
roo 9092 roo DM_ROO 9092bp 1096..1160 795..856 129 73.1 Plus
roo 9092 roo DM_ROO 9092bp 1102..1179 806..882 126 67.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2490..2549 821..882 125 69.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6827..6919 790..879 123 63.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2307..2368 832..893 121 66.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 882..908 714..740 117 92.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2598..2666 799..864 112 70.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 5628..5696 823..900 109 65.4 Plus
BS 5142 BS BS 5142bp 2087..2115 826..854 109 86.2 Plus

FMO11435.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-09 10:06:08 Download gff for FMO11435.5prime
Subject Subject Range Query Range Percent Splice Strand
Mlf-RE 109..1161 9..1058 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:47:20 Download gff for FMO11435.5prime
Subject Subject Range Query Range Percent Splice Strand
Mlf-RE 109..1161 9..1058 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:18:48 Download gff for FMO11435.5prime
Subject Subject Range Query Range Percent Splice Strand
Mlf-RE 109..1161 9..1058 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:18:48 Download gff for FMO11435.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 15937679..15937879 818..1014 96 <- Minus
2R 15938447..15938978 286..817 100 <- Minus
2R 15939037..15939257 65..285 100 <- Minus
2R 15939910..15939965 9..64 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:47:20 Download gff for FMO11435.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11825184..11825384 818..1014 96 <- Minus
arm_2R 11825952..11826483 286..817 100 <- Minus
arm_2R 11826542..11826762 65..285 100 <- Minus
arm_2R 11827415..11827470 9..64 100   Minus