FMO11436.5prime Sequence
1121 bp (989 high quality bases) assembled on 2011-12-09
> FMO11436.5prime
CAGTCGACATGGCCCAACCACAGCTGCTGCAAATCAAATTGTCACGTTTC
GATGCCCAACCCTGGGGATTCCGCCTTCAGGGGGGCACGGACTTCGCTCA
GCCCCTGCTGGTGCAAAAGGTGAACGCCGGCAGCTTGTCCGAGCAGGCTG
GCCTCCAGCCCGGCGATGCGGTGGTCAAGATCAATGACGTGGATGTCTTC
AATCTGCGTCACAAGGATGCCCAGGACATTGTGGTGCGCTCCGGCAACAA
CTTTGTCATCACAGTGCAGCGCGGTGGCTCCACCTGGCGCCCGCATGTGA
CACCGACTGGCAATGTGCCGCAGCCCAACTCGCCGTATCTGCAGACGGTG
ACGAAGACCTCTCTGGCTCACAAACAACAGGACAGCCAGCACATCGGCTG
TGGCTACAACAACGCGGCCCGTCCCTTCTCCAACGGCGGCGATGGCGGCG
TGAAGAGCATTGTCAATAAACAATACAACACCCCGGTTGGCATTTACAGC
GATGAATCTATTGCGGAAACACTCTCGGCCCAGGCGGAGGTTTTGGCTGG
CGGTGTGCTCGGCGTCAACTTCAAGAAGAACGAGAAGGAATACCAGGGCG
ATCGCTCCGAGGTTCTGAAGTTCCTGCGCGAGGAGGAGACCGGCCAGTCC
ACTCCAGCATTCGGCAATAGCCACTACGAGCATGATGCACCACAGCAACT
GCAACAGCCACAACAGCAATACAACCAACACCAGCAACACTATCACCAGC
AACAACAACAACAGCAATCGAGCACCACTCGCCATGTCAGCGCCCCCGTG
AACTCCCCCAAGCCCCCGAGCACCGGCGGACTCCCAACTGGCCAGAACAT
TTGCACCGAATGCGAGCGCCTCATTACTGGCGTTTTCGTGCGCATCAGGA
TAGAACCTGCACGTGGAGTGCTTCAGTGTGCACGTGTGGCACCTCGCTGA
AGACCAAGGGCTACTACACTTCAACACCAAGCTCTTACTGCCACATCCAC
GCGACAGCGCCATCCAACATTCCCCCCACGGCACGAGGCTACGTCCGTCA
TCAGCAACAGCTGATGCCTCACATCCCTTCGCTGACTCGAGATCGGTGCC
ATCGACGCATCAATGAAATCC
FMO11436.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:18:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Zasp52-RW | 7088 | CG30084-RW | 206..1253 | 9..1046 | 4830 | 98.1 | Plus |
Zasp52-RM | 4790 | CG37-RM | 206..1253 | 9..1046 | 4830 | 98.1 | Plus |
Zasp52-RL | 3527 | CG37-RL | 206..1253 | 9..1046 | 4830 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:18:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 15780058..15780280 | 877..655 | 1115 | 100 | Minus |
2R | 25286936 | 2R | 15783088..15783245 | 428..271 | 790 | 100 | Minus |
2R | 25286936 | 2R | 15783315..15783468 | 271..118 | 770 | 100 | Minus |
2R | 25286936 | 2R | 15781773..15781906 | 562..429 | 670 | 100 | Minus |
2R | 25286936 | 2R | 15803359..15803471 | 121..9 | 565 | 100 | Minus |
2R | 25286936 | 2R | 15780985..15781080 | 657..562 | 480 | 100 | Minus |
2R | 25286936 | 2R | 15778418..15778550 | 1002..874 | 295 | 91.8 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:18:48 has no hits.
FMO11436.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-09 10:06:09 Download gff for
FMO11436.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Zasp52-RI | 229..1207 | 2..977 | 98 | <- | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:47:25 Download gff for
FMO11436.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Zasp52-RL | 201..1179 | 2..977 | 98 | <- | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:18:50 Download gff for
FMO11436.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Zasp52-RL | 201..1179 | 2..977 | 98 | <- | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:18:50 Download gff for
FMO11436.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 15780058..15780277 | 658..877 | 100 | <- | Minus |
2R | 15780985..15781079 | 563..657 | 100 | <- | Minus |
2R | 15781773..15781906 | 429..562 | 100 | <- | Minus |
2R | 15783088..15783244 | 272..428 | 100 | <- | Minus |
2R | 15783315..15783466 | 120..271 | 100 | <- | Minus |
2R | 15803361..15803476 | 2..119 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:47:25 Download gff for
FMO11436.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 11667563..11667782 | 658..877 | 100 | <- | Minus |
arm_2R | 11668490..11668584 | 563..657 | 100 | <- | Minus |
arm_2R | 11669278..11669411 | 429..562 | 100 | <- | Minus |
arm_2R | 11670593..11670749 | 272..428 | 100 | <- | Minus |
arm_2R | 11670820..11670971 | 120..271 | 100 | <- | Minus |
arm_2R | 11690866..11690981 | 2..119 | 96 | | Minus |