Clone FMO11436 Report

Search the DGRC for FMO11436

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:114
Well:36
Vector:pMK33-CFH-BD
Associated Gene/TranscriptZasp52-RK
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11436.5prime Sequence

1121 bp (989 high quality bases) assembled on 2011-12-09

> FMO11436.5prime
CAGTCGACATGGCCCAACCACAGCTGCTGCAAATCAAATTGTCACGTTTC
GATGCCCAACCCTGGGGATTCCGCCTTCAGGGGGGCACGGACTTCGCTCA
GCCCCTGCTGGTGCAAAAGGTGAACGCCGGCAGCTTGTCCGAGCAGGCTG
GCCTCCAGCCCGGCGATGCGGTGGTCAAGATCAATGACGTGGATGTCTTC
AATCTGCGTCACAAGGATGCCCAGGACATTGTGGTGCGCTCCGGCAACAA
CTTTGTCATCACAGTGCAGCGCGGTGGCTCCACCTGGCGCCCGCATGTGA
CACCGACTGGCAATGTGCCGCAGCCCAACTCGCCGTATCTGCAGACGGTG
ACGAAGACCTCTCTGGCTCACAAACAACAGGACAGCCAGCACATCGGCTG
TGGCTACAACAACGCGGCCCGTCCCTTCTCCAACGGCGGCGATGGCGGCG
TGAAGAGCATTGTCAATAAACAATACAACACCCCGGTTGGCATTTACAGC
GATGAATCTATTGCGGAAACACTCTCGGCCCAGGCGGAGGTTTTGGCTGG
CGGTGTGCTCGGCGTCAACTTCAAGAAGAACGAGAAGGAATACCAGGGCG
ATCGCTCCGAGGTTCTGAAGTTCCTGCGCGAGGAGGAGACCGGCCAGTCC
ACTCCAGCATTCGGCAATAGCCACTACGAGCATGATGCACCACAGCAACT
GCAACAGCCACAACAGCAATACAACCAACACCAGCAACACTATCACCAGC
AACAACAACAACAGCAATCGAGCACCACTCGCCATGTCAGCGCCCCCGTG
AACTCCCCCAAGCCCCCGAGCACCGGCGGACTCCCAACTGGCCAGAACAT
TTGCACCGAATGCGAGCGCCTCATTACTGGCGTTTTCGTGCGCATCAGGA
TAGAACCTGCACGTGGAGTGCTTCAGTGTGCACGTGTGGCACCTCGCTGA
AGACCAAGGGCTACTACACTTCAACACCAAGCTCTTACTGCCACATCCAC
GCGACAGCGCCATCCAACATTCCCCCCACGGCACGAGGCTACGTCCGTCA
TCAGCAACAGCTGATGCCTCACATCCCTTCGCTGACTCGAGATCGGTGCC
ATCGACGCATCAATGAAATCC

FMO11436.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:18:50
Subject Length Description Subject Range Query Range Score Percent Strand
Zasp52-RW 7088 CG30084-RW 206..1253 9..1046 4830 98.1 Plus
Zasp52-RM 4790 CG37-RM 206..1253 9..1046 4830 98.1 Plus
Zasp52-RL 3527 CG37-RL 206..1253 9..1046 4830 98.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:18:47
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15780058..15780280 877..655 1115 100 Minus
2R 25286936 2R 15783088..15783245 428..271 790 100 Minus
2R 25286936 2R 15783315..15783468 271..118 770 100 Minus
2R 25286936 2R 15781773..15781906 562..429 670 100 Minus
2R 25286936 2R 15803359..15803471 121..9 565 100 Minus
2R 25286936 2R 15780985..15781080 657..562 480 100 Minus
2R 25286936 2R 15778418..15778550 1002..874 295 91.8 Minus
Blast to na_te.dros performed on 2014-11-27 20:18:48 has no hits.

FMO11436.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-09 10:06:09 Download gff for FMO11436.5prime
Subject Subject Range Query Range Percent Splice Strand
Zasp52-RI 229..1207 2..977 98 <- Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:47:25 Download gff for FMO11436.5prime
Subject Subject Range Query Range Percent Splice Strand
Zasp52-RL 201..1179 2..977 98 <- Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:18:50 Download gff for FMO11436.5prime
Subject Subject Range Query Range Percent Splice Strand
Zasp52-RL 201..1179 2..977 98 <- Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:18:50 Download gff for FMO11436.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 15780058..15780277 658..877 100 <- Minus
2R 15780985..15781079 563..657 100 <- Minus
2R 15781773..15781906 429..562 100 <- Minus
2R 15783088..15783244 272..428 100 <- Minus
2R 15783315..15783466 120..271 100 <- Minus
2R 15803361..15803476 2..119 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:47:25 Download gff for FMO11436.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11667563..11667782 658..877 100 <- Minus
arm_2R 11668490..11668584 563..657 100 <- Minus
arm_2R 11669278..11669411 429..562 100 <- Minus
arm_2R 11670593..11670749 272..428 100 <- Minus
arm_2R 11670820..11670971 120..271 100 <- Minus
arm_2R 11690866..11690981 2..119 96   Minus