FMO11437.5prime Sequence
1154 bp (1013 high quality bases) assembled on 2011-12-09
> FMO11437.5prime
CAGTCGACATGGTTAACATAGTCGGAGTAGTTTTCCTCTGCGGTCTTGGC
CTCATCAGTGCCGGACGCTTGAATGACGAGGATGTTCTGTCAGATTTGCA
ACGCGTCAGCCAACTCAAAGGACTTGCCCTTGATTTTGTTGGTCAAGTAA
AGGATTTTGATGTGGAGGAGTTGAGCACCCTGGAAACCCGAGTGCCAAGT
CAGGAGGATATGCTGTGTCTAAGCGATTTGACTGCGCTTACGACTGGACT
TCAAAGTGGCCAGTACTGGGCACTGAAAATGTTCGATTCCTGGGGTTCAA
TACCATCTGGTCTACTAACGGGAAACATGTACGACCTGGGAAACTTCGAC
GAGTGCCTCAACATCAATCATGGAGTCAGCCTGGGCAGAACTATCCAGGG
AAAGTACTGTTTTCTTTCAGTGTCTCTTGCCCAGGCGCTGGGAGTCCAGA
GTTCGATCATCGGCCATTTTAAAACTGCCACTTGCCTACCGGCATCCTGC
TCGGCAACTTATATGAACACGTTTATGGGTATGGTGACGAAACAACTGCT
TAACGTCAGTATTCCCAGCTCGGTAATGAGTATCAGCGAATCCAGTTGCC
AAACAAGTGAAAGTGTACCATGGGACGGACTCACCATTTTTATGATAGTG
ATCTTATCGGTGATGGGCTCTTTAGTGGCTTTGTTTACCTTGTGGGACTA
CTGTCTGGGAAAGAATCAGGACCAGCTTCCCACCATTGTAAAGGTGTTTT
CGGCCAGGGTCAACTCTCGTGCTCTATTTCGCATTGTAGAGGTCAACTCT
AGTCCAATTGTGATTGATTGCCTTCATGGAATTAGGTGCCTGTCGCTCAT
GTGGGTTGTCTTCTGCCATCAATATGTTAATGGGCAGCTCTTGCCTCCAA
ATATCAAACATTTTTCCATGCATAATCGTGGGGAGGAGACACCTATGGCA
GTTTTTAATTCTGGACGGCTTTTTCTCCGGTGGAATTCGTTTTTCGTCTT
CGGCGGTCTATTAATGGCTCTCATTCGGTGGCGTAGGAGGATAAAACCAA
GGTAACTGAACGGGCCTTTGAGGACTACATCGCTTGATCGCATATTTCCT
TTTGGGATAGCATGGGATGAATGGAACCTCATGCCATCGAACTGAAAGAC
CTGA
FMO11437.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:20:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10182-RA | 2212 | CG10182-RA | 25..1128 | 8..1111 | 4865 | 97 | Plus |
| CG13325-RD | 2415 | CG13325-RD | 222..868 | 207..856 | 600 | 73.3 | Plus |
| CG13325-RC | 2181 | CG13325-RC | 222..868 | 207..856 | 600 | 73.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:20:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23589093..23589459 | 646..280 | 1835 | 100 | Minus |
| 3R | 32079331 | 3R | 23589524..23589795 | 279..8 | 1360 | 100 | Minus |
| 3R | 32079331 | 3R | 23588732..23588907 | 897..720 | 795 | 97.8 | Minus |
| 3R | 32079331 | 3R | 23588968..23589041 | 720..647 | 370 | 100 | Minus |
| 3R | 32079331 | 3R | 23588535..23588636 | 1035..931 | 230 | 87.7 | Minus |
| 2R | 25286936 | 2R | 13124045..13124178 | 723..856 | 190 | 76.1 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:20:31 has no hits.
FMO11437.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-09 10:06:17 Download gff for
FMO11437.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10182-RA | 14..1124 | 1..1111 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:48:13 Download gff for
FMO11437.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10182-RA | 18..1128 | 1..1111 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:19:26 Download gff for
FMO11437.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10182-RA | 18..1128 | 1..1111 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:19:26 Download gff for
FMO11437.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23589524..23589798 | 1..279 | 98 | | Minus |
| 3R | 23589093..23589459 | 280..646 | 100 | <- | Minus |
| 3R | 23588704..23588906 | 721..928 | 96 | <- | Minus |
| 3R | 23588968..23589041 | 647..720 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:48:13 Download gff for
FMO11437.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19414426..19414628 | 721..928 | 96 | <- | Minus |
| arm_3R | 19414690..19414763 | 647..720 | 100 | <- | Minus |
| arm_3R | 19414815..19415181 | 280..646 | 100 | <- | Minus |
| arm_3R | 19415246..19415520 | 1..279 | 98 | | Minus |
