FMO11438.5prime Sequence
1130 bp (1018 high quality bases) assembled on 2011-12-09
> FMO11438.5prime
CAGTCGACATGTCGGCTTCTGCGAACTTGGCAAACGTTTACGCGGAGCTA
ATGCGGCGGTGTGGCGAGTCATACACGATCACCTATGGAGCGCCACCCAC
CTACTTGGTGAGCATGGTGGGGGCTGCGGAAGCTGGCAAGAAGATTGTGC
TGGTCTTTAAGGAGGATCGCAATGGAGCAGTGGCGAGACTCCGGACCACG
CCCACCAGGGCAGCCCCAAAAAAAGAGGGCTCTGCGGACTTGGATCTGAC
GGGAAGTCCTTTGAAGGACGACTGCCTGGTGGACGCCATAGCCGACTTGT
CCATCGACCTGCAGCTGGATCACTCGAATCCCTGGAAGCTGGAGGAGGAA
TATCAACGCGGAATACCCGTGGACAAGGCTAGGTCCATCGTGTGCTCCGA
GTTCCTGCAGCTGGCCGAGGGACTCGGATCCGTGTGGTTTTTGTGCGACG
GCAGTGATCTCGGGCAGACTCAGTTGCTCCAGTACGAGTTCAACCCTACG
CACTTCTCCAGGGGAATACTTAGCTACCAGGGTGTGCGCCCTGCTTACTT
AGTAACCTCGCAAGCCCTGGTGCGCCATCATGGCAAGACACCGGATGAAA
CTCTCATTGAAAATAGCTACCAGGTCAATCCCCACATGAGACTACGCTGC
TCCTGGACCTCTAGTGCTGCACTTCCGCTCCTGGTGAACCTGAACGACTG
CGATGTGGCTTTGAATCACACTTTTCGCGTGGGCGACTGCGGTCCTTTGA
CGCAGGACTTTATGAATCAGCTGCGCATTCTGGTCTACATACGCGAGGAC
ATCGTCTCCTACCACACGGATGTCAAGCAGGCGTCTCTCGGGATCCCCAC
CTATCGTTGTGGCAGTGGCATTGACATGGACGAGCTGCGCGAGTTCCATT
AATCAGACAATGACAGATTGTCTCTGGCCTTATAGGTCGGTATAGCATCA
GCAATGCGGAGTTTGACATCGAAGATGGTGGTGCCAGAGGGGCCAAAGTT
CCGCCAGCTCACCGATCTAACCCGAATAAGCTTTGGGACCTGCTCAAGTG
CTGCCAATGTCCTACAAGGAATTCTCCAAAATTGGCCTTTAGATATGCTC
TTTCCCATGTGCCTGCCCGGGGTGTAAACC
FMO11438.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:20:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Zwilch-RA | 2232 | CG18729-RA | 88..1175 | 9..1112 | 5020 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:20:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31212250..31213289 | 1056..9 | 4730 | 98.3 | Minus |
Blast to na_te.dros performed 2014-11-27 20:20:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dmir\TRIM | 3111 | Dmir\TRIM DMTRIM 3126bp Derived from X59239 (Rel. 35, Last updated, Version 3). | 1831..1881 | 496..546 | 120 | 70.6 | Plus |
FMO11438.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-09 10:06:18 Download gff for
FMO11438.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| zwilch-RA | 62..1117 | 9..1076 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:48:17 Download gff for
FMO11438.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| zwilch-RA | 88..1143 | 9..1076 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:19:29 Download gff for
FMO11438.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Zwilch-RA | 88..1143 | 9..1076 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:19:29 Download gff for
FMO11438.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31212234..31213289 | 9..1076 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:48:17 Download gff for
FMO11438.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27037956..27039011 | 9..1076 | 98 | | Minus |
