FMO11439.5prime Sequence
1026 bp (1008 high quality bases) assembled on 2011-12-09
> FMO11439.5prime
CAGTCGACATGACATCTCCCTATGGATACAGTAAGCCCACCTTTATGATA
ACGGACCACACTCGCGATCCGTATCATCTGCAGCCGGGTGATGACGACGA
CGATCGGGATGAGGATGAGGAGCGTCAGACGAAGCTGCAGGAGATCATCA
GTTGGCTGCACTTGAATGCCAAGCATCGCAGCAAATGCGAAGTAACAGAA
GGTGCCTTACAGGTCTGGCGGACCCTGCCGGAGCGCATTCGTCAGGATCC
CAGTCTAGCCTCCTTTCGCCAGGAGCACGAACGTCTGCATGGCGATGTGG
ACCAGCTGCACGCGGAGGAGTCGGAATTGCGTGTGCAGAATGGACACCAC
GAGGAGACGGCGCTGGCCAACCAGCCATTCACACAGATCGGGATCAATGT
GACGAACGAGGCGGGTCAGGTGCGGGTGCTCGATGGCAGGGATCTGGAGA
ATAACAACGATGATCAACACGACGAGGCCGAGCCGCATGCCAAGAGTTTG
ATACGAAAGTATCTTATCTGGTTTAAGATAGCCATACTCCTGGTGGTCTG
GTGCGTCTTCACCGCCTTCCTGATGTCCAACAACGAGCATGTGGACCAAC
TGAGCCTCATTAGTGTTCCTAGGAATAGCTCACCCAGAGTATTTCCCATT
GCCACCGCCAGTCTGCAGAGGATTGGCCTGGGCCTGCGCGGACCCTTCCG
CCTGCAGGAGAACGAACTGGCCATTAACGCGAGTGTTCCACTGCCCCTGC
TCCAGGTGCAGGTGATGCGCAGCTATTTCGATGGCGAGGGCATGGAGATC
TACATCGAGAACGCCAGCCAGGTGTGGCAACTGGAACGTGGTCTATCCCG
ATCTGATAGACGCCACCAGGGATACGAATAAGCAGCGTTACCTTCGAGCT
GAGTCCCACTGATCCCTTATGGTGGCCCAGGCCAATCGCACGGGAGCTGA
GCTTCGAGTTCACCAGCTCCATTGAAGGGCGAATTTGCCGCTCCAACTGA
ATGTGGAATGAGTTCGCCCCATCTAT
FMO11439.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:20:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| hoe1-RJ | 3422 | CG12787-RJ | 293..1303 | 9..1026 | 4840 | 98.9 | Plus |
| hoe1-RC | 3340 | CG12787-RC | 211..1221 | 9..1026 | 4840 | 98.9 | Plus |
| hoe1-RI | 3462 | CG12787-RI | 673..1504 | 188..1026 | 3945 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:20:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4911010..4911513 | 1007..500 | 2215 | 98.4 | Minus |
| 2L | 23513712 | 2L | 4931914..4932092 | 187..9 | 895 | 100 | Minus |
| 2L | 23513712 | 2L | 4911722..4911868 | 440..294 | 735 | 100 | Minus |
| 2L | 23513712 | 2L | 4912672..4912779 | 294..187 | 540 | 100 | Minus |
| 2L | 23513712 | 2L | 4911581..4911645 | 500..436 | 325 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:20:46 has no hits.
FMO11439.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-09 10:06:18 Download gff for
FMO11439.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hoe1-RC | 205..1215 | 9..1026 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:48:22 Download gff for
FMO11439.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hoe1-RC | 211..1221 | 9..1026 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:19:32 Download gff for
FMO11439.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hoe1-RC | 211..1221 | 9..1026 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:19:32 Download gff for
FMO11439.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4931914..4932092 | 9..187 | 100 | | Minus |
| 2L | 4911723..4911867 | 295..439 | 100 | <- | Minus |
| 2L | 4912672..4912778 | 188..294 | 100 | <- | Minus |
| 2L | 4910994..4911512 | 501..1026 | 97 | <- | Minus |
| 2L | 4911581..4911641 | 440..500 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:48:22 Download gff for
FMO11439.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4910994..4911512 | 501..1026 | 97 | <- | Minus |
| arm_2L | 4911581..4911641 | 440..500 | 100 | <- | Minus |
| arm_2L | 4911723..4911867 | 295..439 | 100 | <- | Minus |
| arm_2L | 4912672..4912778 | 188..294 | 100 | <- | Minus |
| arm_2L | 4931914..4932092 | 9..187 | 100 | | Minus |
