FMO11440.5prime Sequence
1142 bp (1017 high quality bases) assembled on 2011-12-09
> FMO11440.5prime
CAGTCGACATGCAGAACGGAAAACCGAGATCTTCGGCCAGGCCGTCGTTC
CACCGCCGTCCCAAAGACGGAGTGGCCAACACCACCACTGATAACGCTGC
TGTCAAGCCGGAGGCCTTGGAGAGCTATACGGGCAACGACGACAACGCCT
GCGTGGTGTGCTTCAAAAACGTGGAAATTTTCTCCATCGGCGACTGTGAT
CATCCCGTGTGCTACGAGTGCTCCACTCGGATGAGGGTTCTCTGCCAGCA
GAACGAGTGCCCCATCTGCCGCCACGTCCTGTCCAAGGTTTTGTTCACAC
TGGACAAGCTGCCCTATCGCGAACTGGAGGCAAATAACCGCTCTGATTTA
TACAGCAAGAAGTACCGCATCGGCTTCTGCACCGCAGAGATAAGACAGCA
ATTCTTCAAATTGCTCGACCATCCCTGCCCGAAATGCGATGCACCTCCAT
ACCGCACGTTCGAGGGCCTTCGCAACCATGTTCGCAGCGAGCATAAACTT
CTGTACTGTGACCTATGCGTCGAGACCCTCAATATCTTCACCTTCGAACG
GAGGTGCTACACTCAGGCGGAGCTGCAGCTACACAACACCAAGGGCGATC
CGGACAATCGGTCGCATCGCGGTCATCCGTTGTGCGAATACTGCAATAAA
CGCTATGTGGACCGTGATGAGTTGTTCCGTCATTTGCGCCGCGAGCACTA
CTTCTGCCACTTTTGCGACGCCGATGGTTGCAATGAGTTCTACAATGACT
ATGCGGATCTGGCGGAACATTTCCGGGCGGAGCACTTTCTCTGCGAGGAG
GGTAAGTGCGCCACCGAGCAGTTTGTCGGCGCATTCCGCAACGAAATCGA
GTACAAGCGCACGTGGCCAACGTGCACGGCAAGTCGCTCAACAAGCAGCA
GGCCAAGCAGACGCGCACCTTGCAAGTGAGATCCACTTTGGGGCCTCGTG
CCGTAGTGGGCAGACGGAGCAGGCATACCAGCGTGAGACCCAGTATGACG
AGCACACGACTACCAGAACCGATTTGCCTCGATCACCCACGCCATGGTGG
AGCATTGATGCTGGCACGAGGAAACAGATCCACATTGAAAGGGCGCTTCC
AAGCTTCGAGCGTAATCCAGGGTGATAGCGGCCACTGCTCTG
FMO11440.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:20:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11414-RA | 3139 | CG11414-RA | 254..1366 | 9..1114 | 5025 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:20:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24562406..24562947 | 434..973 | 2520 | 98.5 | Plus |
| 2R | 25286936 | 2R | 24561860..24562140 | 9..289 | 1405 | 100 | Plus |
| 2R | 25286936 | 2R | 24562195..24562342 | 286..433 | 740 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:20:53 has no hits.
FMO11440.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-09 10:06:19 Download gff for
FMO11440.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11414-RA | 244..1338 | 1..1088 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:48:25 Download gff for
FMO11440.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11414-RA | 246..1340 | 1..1088 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:19:35 Download gff for
FMO11440.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11414-RA | 246..1340 | 1..1088 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:19:35 Download gff for
FMO11440.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24561852..24562138 | 1..287 | 98 | -> | Plus |
| 2R | 24562197..24562342 | 288..433 | 100 | -> | Plus |
| 2R | 24562406..24562969 | 434..993 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:48:25 Download gff for
FMO11440.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20449375..20449661 | 1..287 | 98 | -> | Plus |
| arm_2R | 20449720..20449865 | 288..433 | 100 | -> | Plus |
| arm_2R | 20449929..20450492 | 434..993 | 98 | -> | Plus |
