FMO11441.5prime Sequence
1130 bp (1028 high quality bases) assembled on 2011-12-09
> FMO11441.5prime
CAGTCGACATGACTACGAAATTCTCAATCAATGGGCTGCCCTATGCAGTG
AATCTAACTAACCTTCCGCCGGATATCACTCTGAACACCTTTATCCGCGA
GCATGCCCAACTCACGGCCACCAAATTCATGTGCCAGGAGGGAGGATGTG
GCGCCTGCATCTGCGTGGTGCGCGATGGAAAGCGCAGCTGGGCTGTCAAT
TCGTGCCTCACTCTGCTGAATACCTGCGCCCAGCTGGAGATCGTGACCGC
CGAGGGATTGGGCAATCAGCGCACCGGCTACAATCCCATCCAGAAGCGTC
TGGCCAAAATGAATGGCACCCAGTGCGGCTTTTGCTCGCCGGGATTCGTG
ATGAACATGTATGGGTTGATGGAGCAGAACGAAGGCAAGGTCACCATGGC
GGAGGTGGAGAACTCCTTTGGTGGGAATATCTGCCGTTGCACTGGATATC
GTCCAATTCTGGATGCCATGAAGTCCTTTGCGGTGGACAGTAACATTGCG
ATTCCCGCCGAGTGCGGGGACATTGAGGATCTAAAACCCCGGAACTGCCC
AAAGACCGGACAAGCCTGCAGTGGTAGCTGCCTTCCGTCCACTTTGGTCT
ACGAAGATGGTGTTCAGTGGCACTGGCCCAAGAGTCTAAGCGAACTGTTC
GACGCCCTAGACAAGGTGAAGGACTCGGAGGAGTTCATGTTGGTGGCTGG
CAACACGGCTCATGGGGTCTACCGAAGGTCGACGGATATCAAGCACTTCA
TCGACGTCCAGGGAGTGGAGGAACTGCATCAGCACAGCTCTGAGGGACAG
CAATTGAAGCTAGGAGCTAATCTCAGTCTCACCCAGACCATGGAATCATT
CGTACTACTTCAAAGCAGCCAGGATTTGAGTACTTGGACGTTCTGTGAAC
CACATTGATTTGATTGCCATTGTCCAGTGCGAAACTCTGGACCTTTGGCT
GGCAATATTCGATCAAAAACAATCCCGAGTTCCTCGATATTTCATATCCT
TGAGCCTGATGTTAAGTGGTAGCTGAAACGCCTGCTGATGAAGGAATGTC
CTTGCAGAAATATCTGGCCAATGATAAAAGCTGGGTCAACCTTTGGTCTC
TGCCTACCCGAGACACAATACATATGAGAT
FMO11441.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:21:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
AOX3-RA | 4163 | CG6045-RA | 277..1424 | 9..1123 | 4810 | 96.2 | Plus |
AOX4-RA | 3832 | CG18516-RA | 95..1021 | 42..959 | 1345 | 77.5 | Plus |
AOX1-RA | 4228 | CG18522-RA | 271..796 | 62..569 | 725 | 76.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:21:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15545935..15546670 | 935..203 | 3515 | 99.5 | Minus |
3R | 32079331 | 3R | 15551836..15552429 | 790..203 | 955 | 77.8 | Minus |
3R | 32079331 | 3R | 15546729..15546886 | 203..46 | 790 | 100 | Minus |
3R | 32079331 | 3R | 15536018..15536405 | 569..182 | 710 | 78.9 | Minus |
3R | 32079331 | 3R | 15541724..15542050 | 529..203 | 510 | 77.1 | Minus |
3R | 32079331 | 3R | 15552509..15552639 | 191..61 | 295 | 81.7 | Minus |
3R | 32079331 | 3R | 15536441..15536543 | 164..62 | 230 | 81.6 | Minus |
3R | 32079331 | 3R | 15547355..15547394 | 48..9 | 200 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:21:00 has no hits.
FMO11441.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-09 10:06:20 Download gff for
FMO11441.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6045-RA | 268..1307 | 1..1024 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:48:28 Download gff for
FMO11441.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6045-RA | 269..1308 | 1..1024 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:19:37 Download gff for
FMO11441.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AOX3-RA | 269..1308 | 1..1024 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:19:37 Download gff for
FMO11441.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15545854..15545877 | 936..959 | 95 | <- | Minus |
3R | 15545935..15546669 | 204..935 | 99 | <- | Minus |
3R | 15546729..15546883 | 49..203 | 100 | <- | Minus |
3R | 15547355..15547398 | 1..48 | 91 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:48:28 Download gff for
FMO11441.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11371576..11371599 | 936..959 | 95 | <- | Minus |
arm_3R | 11371657..11372391 | 204..935 | 99 | <- | Minus |
arm_3R | 11372451..11372605 | 49..203 | 100 | <- | Minus |
arm_3R | 11373077..11373120 | 1..48 | 91 | | Minus |