Clone FMO11441 Report

Search the DGRC for FMO11441

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:114
Well:41
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG6045-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11441.5prime Sequence

1130 bp (1028 high quality bases) assembled on 2011-12-09

> FMO11441.5prime
CAGTCGACATGACTACGAAATTCTCAATCAATGGGCTGCCCTATGCAGTG
AATCTAACTAACCTTCCGCCGGATATCACTCTGAACACCTTTATCCGCGA
GCATGCCCAACTCACGGCCACCAAATTCATGTGCCAGGAGGGAGGATGTG
GCGCCTGCATCTGCGTGGTGCGCGATGGAAAGCGCAGCTGGGCTGTCAAT
TCGTGCCTCACTCTGCTGAATACCTGCGCCCAGCTGGAGATCGTGACCGC
CGAGGGATTGGGCAATCAGCGCACCGGCTACAATCCCATCCAGAAGCGTC
TGGCCAAAATGAATGGCACCCAGTGCGGCTTTTGCTCGCCGGGATTCGTG
ATGAACATGTATGGGTTGATGGAGCAGAACGAAGGCAAGGTCACCATGGC
GGAGGTGGAGAACTCCTTTGGTGGGAATATCTGCCGTTGCACTGGATATC
GTCCAATTCTGGATGCCATGAAGTCCTTTGCGGTGGACAGTAACATTGCG
ATTCCCGCCGAGTGCGGGGACATTGAGGATCTAAAACCCCGGAACTGCCC
AAAGACCGGACAAGCCTGCAGTGGTAGCTGCCTTCCGTCCACTTTGGTCT
ACGAAGATGGTGTTCAGTGGCACTGGCCCAAGAGTCTAAGCGAACTGTTC
GACGCCCTAGACAAGGTGAAGGACTCGGAGGAGTTCATGTTGGTGGCTGG
CAACACGGCTCATGGGGTCTACCGAAGGTCGACGGATATCAAGCACTTCA
TCGACGTCCAGGGAGTGGAGGAACTGCATCAGCACAGCTCTGAGGGACAG
CAATTGAAGCTAGGAGCTAATCTCAGTCTCACCCAGACCATGGAATCATT
CGTACTACTTCAAAGCAGCCAGGATTTGAGTACTTGGACGTTCTGTGAAC
CACATTGATTTGATTGCCATTGTCCAGTGCGAAACTCTGGACCTTTGGCT
GGCAATATTCGATCAAAAACAATCCCGAGTTCCTCGATATTTCATATCCT
TGAGCCTGATGTTAAGTGGTAGCTGAAACGCCTGCTGATGAAGGAATGTC
CTTGCAGAAATATCTGGCCAATGATAAAAGCTGGGTCAACCTTTGGTCTC
TGCCTACCCGAGACACAATACATATGAGAT

FMO11441.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:21:02
Subject Length Description Subject Range Query Range Score Percent Strand
AOX3-RA 4163 CG6045-RA 277..1424 9..1123 4810 96.2 Plus
AOX4-RA 3832 CG18516-RA 95..1021 42..959 1345 77.5 Plus
AOX1-RA 4228 CG18522-RA 271..796 62..569 725 76.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:21:00
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15545935..15546670 935..203 3515 99.5 Minus
3R 32079331 3R 15551836..15552429 790..203 955 77.8 Minus
3R 32079331 3R 15546729..15546886 203..46 790 100 Minus
3R 32079331 3R 15536018..15536405 569..182 710 78.9 Minus
3R 32079331 3R 15541724..15542050 529..203 510 77.1 Minus
3R 32079331 3R 15552509..15552639 191..61 295 81.7 Minus
3R 32079331 3R 15536441..15536543 164..62 230 81.6 Minus
3R 32079331 3R 15547355..15547394 48..9 200 100 Minus
Blast to na_te.dros performed on 2014-11-27 20:21:00 has no hits.

FMO11441.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-09 10:06:20 Download gff for FMO11441.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6045-RA 268..1307 1..1024 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:48:28 Download gff for FMO11441.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6045-RA 269..1308 1..1024 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:19:37 Download gff for FMO11441.5prime
Subject Subject Range Query Range Percent Splice Strand
AOX3-RA 269..1308 1..1024 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:19:37 Download gff for FMO11441.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 15545854..15545877 936..959 95 <- Minus
3R 15545935..15546669 204..935 99 <- Minus
3R 15546729..15546883 49..203 100 <- Minus
3R 15547355..15547398 1..48 91   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:48:28 Download gff for FMO11441.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11371576..11371599 936..959 95 <- Minus
arm_3R 11371657..11372391 204..935 99 <- Minus
arm_3R 11372451..11372605 49..203 100 <- Minus
arm_3R 11373077..11373120 1..48 91   Minus