FMO11443.5prime Sequence
1171 bp (1054 high quality bases) assembled on 2011-12-09
> FMO11443.5prime
CAGTCGACATGGCTGCAAAGGAGACGATGATTGTGTTTGTCTACGACACA
GAGTGTCTCACAGACGAGGCGGATGATCCCATATCGGCGGTGCTCTACTT
CCATCCAAGCTGGGTGTCCGACTCCCAGAAGGTGGCTCTGTGTGGTCAGC
TTATGGGCACGTCGTATTTCCTCAAGGATTGCTTCTTTAATCCCCGCATC
CTGGCGCTGCAGAATGGAAAATTTGTGCTGAAGGAATTCGGTCGTTTTAT
TCTGGCAATTGGCACTGATCGAAATATTGGAGATCAACTGTTGGAACATC
GTGCTGATCTGCTGAGTTCCCTGCTCAAGTTTTTCCACCGTGACGTCCAG
ACATTGTATGCCCAGTATGCTGCACCGCCCGCCCTGAACCGCCGGAATCT
CAGCGAGAAACTGTACCACATCTTTGAAACATATCTGCCGATGCTGCAGC
GCAACGGAAATACATTTCAAAATGTGCCGAGGCTGCGAATGCCAAAGACG
GCCAGTCATATATTCCTGGAGGCTATACAAACGTTGCAAAGTTGCCAGCA
GACAAAGGGAATACTTGGCGGAGCGATTCTGTACCACAACAAGGTGGTTG
CCTCGCAACTGAGCGATATGGTGACCAAGCATCTTGTACTCACCGATCCT
CTGCACATCCGCACTGCGGCCGAGCAAGTGACCAACCATCCTGAGTTCCA
CATACCCAACGGCGTTCAGATGCTGGTGGTTTATTTGGAGCATATGCAGT
ACCGCCAGTTAGCTGGCGAGGCACAGCGCGCCCAGAACCTGCAGATGAAC
ACAGCTCAGCTCACCCAAAATGGTATGCCGTTTCAGTATGCCAAGCGTAA
GATAAAGCGGGACAAGTCGCTCATTTTTACCCATATACCCGAGGAGGAGC
ACGCCCCGGGAGCAGCAGGAGCAGTTGAAAAGCTACCACCAGCCAGGCCC
AAATCTATGCGACCCACCCACCTGCCGTTGCGTAATAAAAAGCATGCAAA
GCAAAAAGCTACCTGAAGTCTGGCATTGCATCAATAAATTTCGACGAAAT
CGAATTCTATCCGCAGTCAATGGAACGAACCAGCGTTGCAAATACTCCAA
TGACCGAAAAAACAAGGTACTGCGGGTGCATGTTATGTCCAATTGCCAAT
CGAAAATAAGGACAGAGGAGG
FMO11443.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:21:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| HPS4-RB | 3429 | CG4966-RB | 145..1281 | 9..1146 | 5250 | 97.9 | Plus |
| HPS4-RA | 3522 | CG4966-RA | 249..1374 | 20..1146 | 5195 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:21:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17688007..17688538 | 593..1128 | 2180 | 95.9 | Plus |
| 2R | 25286936 | 2R | 17687555..17687798 | 254..497 | 1220 | 100 | Plus |
| 2R | 25286936 | 2R | 17687258..17687493 | 20..255 | 1180 | 100 | Plus |
| 2R | 25286936 | 2R | 17687852..17687949 | 496..593 | 490 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:21:16 has no hits.
FMO11443.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-09 10:06:21 Download gff for
FMO11443.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HPS4-RB | 113..1262 | 1..1149 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:48:35 Download gff for
FMO11443.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HPS4-RB | 136..1285 | 1..1149 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:19:43 Download gff for
FMO11443.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HPS4-RB | 136..1285 | 1..1149 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:19:43 Download gff for
FMO11443.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17687258..17687492 | 20..254 | 100 | -> | Plus |
| 2R | 17687556..17687798 | 255..497 | 100 | -> | Plus |
| 2R | 17687854..17687948 | 498..592 | 100 | -> | Plus |
| 2R | 17688007..17688563 | 593..1149 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:48:35 Download gff for
FMO11443.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13574763..13574997 | 20..254 | 100 | -> | Plus |
| arm_2R | 13575061..13575303 | 255..497 | 100 | -> | Plus |
| arm_2R | 13575359..13575453 | 498..592 | 100 | -> | Plus |
| arm_2R | 13575512..13576068 | 593..1149 | 95 | | Plus |
