FMO11444.5prime Sequence
1031 bp (956 high quality bases) assembled on 2011-12-09
> FMO11444.5prime
CAGTCGACATGTCGTCCCTTTTGAACGCTACCGTCCTGGCAACCGCTGCC
ACCGTGGTTCCCGACTCACAGTTCGTTTTCAACGCCACGGATTACGGCGT
ATTCGCCCTGGTGCTGAGCATCTCTGCCGCTATTGGAGTTTATTTCGGTT
TCTTTGCCAAGGGCGAGGACACCACGGAGGAGTACCTGATGGGCGGCAAG
CGGATGAAAACGATTCCCATCGCCATTTCGCTGGTGGCCAGTCAACTGTC
GGCGATCTCCATAATGACCATTCCGGCGGAAATGTACGCCTACGGAATCA
ACTGGGTTTTCAACGTGGTTTGCATGGTGCTTGTGGTGCCGCTTCTTAAT
TACTTGGTGATCCCGGTTTTCTACAACAATAATATCACAAACTGCTATGA
GTACTTGGAGATGCGCTTTTGCCGGAAGGTGCGAGTGCTGCAGACCTTCA
TCTTCATATTGACGATGTTTTTCATGCTCCCGATCTTTATCTTCCTGCCT
TCCCTGGCCTTTGCACAGGTGACCGGATTTAATGTGCACCTAATCAACAC
CGTTGTGTGCAGCATCTGCGTCTTCTACACCATGTTCGGAGGTATCAAGG
CTGTGGTGTGGACCGATGTTATCCAGGCAGCCATTATGGTTGCATCCGTG
GTCCTAGTGGGCGTTTTGGGCGCCCACCGAGTGGGAGGCTTCTTTGAAGT
GCTGCGCATTGCCGGGGAAGGTGGACGCCTGGATATCAACTACAACTTCG
ACCTGACCACGCGCTCTACCATATGGGAACATTTTCACATCGGGCGACTA
TGATGTGGGACGGGAATACGTGGGTCTGAACCAGAGCTGCGTGCAGCGAA
ATCGTGTCCCTGCCTTTCACTGGGTCACCCCAGAAGATCGTCTGGTGCTC
TTTGGCTTCGGGTTTATCCTGGATCATGGTTCTTCACTGGCTCCCAGGCA
TTGTGAATTTGTTCCCGCTTCCCGAACTGCCGATCCATCCCGTTGGGTCA
TGTCCTCTAAAGGGTGACAAGATAGGTTTCG
FMO11444.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:21:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Smvt-RA | 1996 | CG2191-RA | 105..1112 | 5..1023 | 4505 | 97.2 | Plus |
| CG2187-RB | 2021 | CG2187-RB | 195..366 | 132..303 | 230 | 76.3 | Plus |
| CG2187-RA | 2580 | CG2187-RA | 754..925 | 132..303 | 230 | 76.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:21:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31761079..31761475 | 401..5 | 1970 | 99.7 | Minus |
| 3R | 32079331 | 3R | 31760361..31760837 | 1004..519 | 1665 | 93.8 | Minus |
| 3R | 32079331 | 3R | 31760896..31761015 | 519..400 | 600 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:21:24 has no hits.
FMO11444.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-09 10:06:22 Download gff for
FMO11444.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Smvt-RA | 98..1069 | 1..980 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:48:40 Download gff for
FMO11444.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Smvt-RA | 100..1071 | 1..980 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:19:45 Download gff for
FMO11444.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Smvt-RA | 100..1071 | 1..980 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:19:45 Download gff for
FMO11444.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31760385..31760836 | 520..980 | 95 | <- | Minus |
| 3R | 31760896..31761013 | 402..519 | 100 | <- | Minus |
| 3R | 31761079..31761476 | 1..401 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:48:40 Download gff for
FMO11444.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27586107..27586558 | 520..980 | 95 | <- | Minus |
| arm_3R | 27586618..27586735 | 402..519 | 100 | <- | Minus |
| arm_3R | 27586801..27587198 | 1..401 | 99 | | Minus |
