Clone FMO11445 Report

Search the DGRC for FMO11445

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:114
Well:45
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCASK-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11445.5prime Sequence

1097 bp (1027 high quality bases) assembled on 2011-12-09

> FMO11445.5prime
CAGTCGACATGACCGAAGACGAAATTCTCTTTGACGACGTCTACGAGCTG
TGCGAGGTCATTGGCAAAGGACCTTTCTCCATCGTAAGGCGATGCATACA
CAGGGAGTCCAATCAGCAGTTTGCCGTCAAAATCGTTGATGTGGCCAAGT
TCACAGCGAGTCCTGGACTGAGCACAGCGGATCTGAAGCGCGAGGCCACA
ATATGTCACATGTTAAAGCATCCGCACATTGTAGAGCTGCTGGAGACGTA
CAGTTCCGAGGGAATGCTCTACATGGTCTTCGAGTTCATGGAGGGCTCCG
ACTTGTGCTTCGAGGTTGTGCGGCGTGCTGTTGCCGGTTTTGTCTACAGC
GAGGCGGTTGCTTGTCACTATATGCGACAAATCCTGGAGGCACTGCGCTA
TTGTCACGAGAACGACATCCTGCACAGGGATGTTCGTCCCGCCTGCGCTC
TCCTCGCCACCGTCGACAACTCGGCGCCGGTGAAACTTGGCGGCTTCGGA
TCGGCCATTCAGTTGCCCGGCACCCGGGAAACCATAGAAACACACGGACG
GGTAGGATGTCCGCATTATATGGCGCCAGAGGTGGTGACCAGGCGGCTTT
ACGGCAAAGGCTGCGATGTGTGGGGTGCCGGAGTGATGCTGCACGTCCTG
CTCTCGGGCAGATTGCCCTTCCTGGGATCCGGAGTGAGGTTGCAGCAGTC
AGTAGCTCGCGGTCGGTTATCGTTTGAAGCACCGGAGTGGAAATCAATCT
CGGCGAACGCCAAGGACTTAGTCATGAAATGCTGGCCGCCAATCCACATC
ACAGACTCTCCATAACCGAGGTGCTGGATCATCCATGGATACGGGATCGG
GACAAACTACAGCGCACTCACCTAGCGGACACGGTGGAGGAATTGAAACG
CTACAATGCCCGGCGCAAGCTAAGGTGCTGTTCAGCCATCGCAGAAGGCA
CCAACATGGATCCACTATACGCCACCGATGCGGACATGCCCATAACGGCC
GCCACGAACGAATGGGCCGACGAGGAGGCGGGCATTGAAGCATCACGCAT
CTTTGGACTTTCTGGAATGACATTATATTCGCCTGCAGAACCACATA

FMO11445.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:21:33
Subject Length Description Subject Range Query Range Score Percent Strand
CASK-RF 6544 CG6703-RF 511..1593 9..1088 5080 98.4 Plus
CASK-RH 4128 CG6703-RH 511..1593 9..1088 5080 98.4 Plus
CASK-RB 4128 CG6703-RB 511..1593 9..1088 5080 98.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:21:31
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21818152..21818510 722..364 1795 100 Minus
3R 32079331 3R 21817818..21818086 986..722 1165 98.1 Minus
3R 32079331 3R 21819654..21819766 180..68 565 100 Minus
3R 32079331 3R 21819018..21819124 286..180 535 100 Minus
3R 32079331 3R 21818872..21818949 364..287 390 100 Minus
3R 32079331 3R 21820647..21820705 67..9 295 100 Minus
3R 32079331 3R 21817395..21817450 1042..987 220 92.9 Minus
Blast to na_te.dros performed on 2014-11-27 20:21:32 has no hits.

FMO11445.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-09 10:06:22 Download gff for FMO11445.5prime
Subject Subject Range Query Range Percent Splice Strand
CASK-RF 471..1535 1..1059 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:48:45 Download gff for FMO11445.5prime
Subject Subject Range Query Range Percent Splice Strand
CASK-RB 503..1567 1..1059 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:19:48 Download gff for FMO11445.5prime
Subject Subject Range Query Range Percent Splice Strand
CASK-RB 503..1567 1..1059 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:19:48 Download gff for FMO11445.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 21819018..21819123 181..286 100 <- Minus
3R 21819654..21819766 68..180 100 <- Minus
3R 21820647..21820712 1..67 94   Minus
3R 21817818..21818085 723..986 98 <- Minus
3R 21818152..21818509 365..722 100 <- Minus
3R 21818872..21818949 287..364 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:48:45 Download gff for FMO11445.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17643540..17643807 723..986 98 <- Minus
arm_3R 17643874..17644231 365..722 100 <- Minus
arm_3R 17644594..17644671 287..364 100 <- Minus
arm_3R 17644740..17644845 181..286 100 <- Minus
arm_3R 17645376..17645488 68..180 100 <- Minus
arm_3R 17646369..17646434 1..67 94   Minus