FMO11445.5prime Sequence
1097 bp (1027 high quality bases) assembled on 2011-12-09
> FMO11445.5prime
CAGTCGACATGACCGAAGACGAAATTCTCTTTGACGACGTCTACGAGCTG
TGCGAGGTCATTGGCAAAGGACCTTTCTCCATCGTAAGGCGATGCATACA
CAGGGAGTCCAATCAGCAGTTTGCCGTCAAAATCGTTGATGTGGCCAAGT
TCACAGCGAGTCCTGGACTGAGCACAGCGGATCTGAAGCGCGAGGCCACA
ATATGTCACATGTTAAAGCATCCGCACATTGTAGAGCTGCTGGAGACGTA
CAGTTCCGAGGGAATGCTCTACATGGTCTTCGAGTTCATGGAGGGCTCCG
ACTTGTGCTTCGAGGTTGTGCGGCGTGCTGTTGCCGGTTTTGTCTACAGC
GAGGCGGTTGCTTGTCACTATATGCGACAAATCCTGGAGGCACTGCGCTA
TTGTCACGAGAACGACATCCTGCACAGGGATGTTCGTCCCGCCTGCGCTC
TCCTCGCCACCGTCGACAACTCGGCGCCGGTGAAACTTGGCGGCTTCGGA
TCGGCCATTCAGTTGCCCGGCACCCGGGAAACCATAGAAACACACGGACG
GGTAGGATGTCCGCATTATATGGCGCCAGAGGTGGTGACCAGGCGGCTTT
ACGGCAAAGGCTGCGATGTGTGGGGTGCCGGAGTGATGCTGCACGTCCTG
CTCTCGGGCAGATTGCCCTTCCTGGGATCCGGAGTGAGGTTGCAGCAGTC
AGTAGCTCGCGGTCGGTTATCGTTTGAAGCACCGGAGTGGAAATCAATCT
CGGCGAACGCCAAGGACTTAGTCATGAAATGCTGGCCGCCAATCCACATC
ACAGACTCTCCATAACCGAGGTGCTGGATCATCCATGGATACGGGATCGG
GACAAACTACAGCGCACTCACCTAGCGGACACGGTGGAGGAATTGAAACG
CTACAATGCCCGGCGCAAGCTAAGGTGCTGTTCAGCCATCGCAGAAGGCA
CCAACATGGATCCACTATACGCCACCGATGCGGACATGCCCATAACGGCC
GCCACGAACGAATGGGCCGACGAGGAGGCGGGCATTGAAGCATCACGCAT
CTTTGGACTTTCTGGAATGACATTATATTCGCCTGCAGAACCACATA
FMO11445.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:21:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CASK-RF | 6544 | CG6703-RF | 511..1593 | 9..1088 | 5080 | 98.4 | Plus |
CASK-RH | 4128 | CG6703-RH | 511..1593 | 9..1088 | 5080 | 98.4 | Plus |
CASK-RB | 4128 | CG6703-RB | 511..1593 | 9..1088 | 5080 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:21:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21818152..21818510 | 722..364 | 1795 | 100 | Minus |
3R | 32079331 | 3R | 21817818..21818086 | 986..722 | 1165 | 98.1 | Minus |
3R | 32079331 | 3R | 21819654..21819766 | 180..68 | 565 | 100 | Minus |
3R | 32079331 | 3R | 21819018..21819124 | 286..180 | 535 | 100 | Minus |
3R | 32079331 | 3R | 21818872..21818949 | 364..287 | 390 | 100 | Minus |
3R | 32079331 | 3R | 21820647..21820705 | 67..9 | 295 | 100 | Minus |
3R | 32079331 | 3R | 21817395..21817450 | 1042..987 | 220 | 92.9 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:21:32 has no hits.
FMO11445.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-09 10:06:22 Download gff for
FMO11445.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CASK-RF | 471..1535 | 1..1059 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:48:45 Download gff for
FMO11445.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CASK-RB | 503..1567 | 1..1059 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:19:48 Download gff for
FMO11445.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CASK-RB | 503..1567 | 1..1059 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:19:48 Download gff for
FMO11445.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21819018..21819123 | 181..286 | 100 | <- | Minus |
3R | 21819654..21819766 | 68..180 | 100 | <- | Minus |
3R | 21820647..21820712 | 1..67 | 94 | | Minus |
3R | 21817818..21818085 | 723..986 | 98 | <- | Minus |
3R | 21818152..21818509 | 365..722 | 100 | <- | Minus |
3R | 21818872..21818949 | 287..364 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:48:45 Download gff for
FMO11445.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 17643540..17643807 | 723..986 | 98 | <- | Minus |
arm_3R | 17643874..17644231 | 365..722 | 100 | <- | Minus |
arm_3R | 17644594..17644671 | 287..364 | 100 | <- | Minus |
arm_3R | 17644740..17644845 | 181..286 | 100 | <- | Minus |
arm_3R | 17645376..17645488 | 68..180 | 100 | <- | Minus |
arm_3R | 17646369..17646434 | 1..67 | 94 | | Minus |