Clone FMO11446 Report

Search the DGRC for FMO11446

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:114
Well:46
Vector:pMK33-CFH-BD
Associated Gene/TranscriptSh-RD
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11446.5prime Sequence

1137 bp (1010 high quality bases) assembled on 2011-12-09

> FMO11446.5prime
CAGTCGACATGGCACACATCACGACGACGCACGGCAGCTTAAGCCAAGCG
ACAAGGTCTTTGCCCAAATTGAGCAGTCAAGACGAAGAAGGGGGGGCTGG
TCATGGCTTTGGTGGCGGACCGCAACACTTTGAACCCATTCCTCACGATC
ATGATTTCTGCGAAAGAGTCGTTATAAATGTAAGCGGATTAAGGTTTGAG
ACACAACTACGTACGTTAAATCAATTCCCGGACACGCTGCTTGGGGATCC
AGCTCGGAGATTACGGTACTTTGACCCGCTTAGAAATGAATATTTTTTTG
ACCGTAGTCGACCGAGCTTCGATGCGATTTTATACTATTATCAGAGTGGT
GGCCGACTACGGAGACCGGTCAATGTCCCTTTAGACGTATTTAGTGAAGA
AATAAAATTTTATGAATTAGGTGATCAAGCAATTAATAAATTCAGAGAGG
ATGAAGGCTTTATTAAAGAGGAAGAAAGACCATTACCGGATAATGAGAAA
CAGAGAAAAGTCTGGCTGCTCTTCGAGTATCCAGAAAGTTCGCAAGCCGC
CAGAGTTGTAGCCATAATTAGTGTATTTGTTATATTGCTATCAATTGTTA
TATTTTGTCTAGAAACATTACCCGAATTTAAAGCATTACAAGGTGTTCAA
TACAACAACAAATGGCACAAAAATCGAGGAAGACGAGGTGCCTGACATCA
CAGATCCTTTCTTCCTTATAGAAACGTTATGTATTATTTGGTTTACATTT
GAACTAACTGTCAGGTTCCTCGCATGTCCGAACAAATTAAATTTCTGCAG
GGATGTCATGAATGTTATCGACATAATCGCCATCATTCCGTACTTTATAA
CACTAGCGACTGTCGTTGCCGAAGGAGGAGGATACGTTAAATCTTCCAAA
AGCGCCAGTCAGTCCACAGGACAAGTCATCGAATCAGCTATGTCCTTGGC
ATATTACGAGTGAATACGATTAGTTCGAGTATTTCGATATTTAAGTTATC
TAAGCATTCGAAGCTTACAATAATTAGGACGAACTTCTGAAGCCTCAATG
CGGATTAAGTTACTATAGTTCTAATATAGGCTCGTACTTTTCCATCGCGC
TTATTTGCGGACTGAACGAAATTACCTATCTCTCAGT

FMO11446.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:20:09
Subject Length Description Subject Range Query Range Score Percent Strand
Sh-RD 2442 CG12348-RD 275..1321 9..1053 4955 98.7 Plus
Sh-RS 3836 CG12348-RS 1496..2497 54..1053 4730 98.6 Plus
Sh-RT 2781 CG12348-RT 787..1787 55..1053 4725 98.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:20:06
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17951412..17951613 645..443 965 99.5 Minus
X 23542271 X 17952986..17953156 350..180 855 100 Minus
X 23542271 X 17950610..17950768 920..761 750 99.4 Minus
X 23542271 X 17953221..17953348 181..54 640 100 Minus
X 23542271 X 17951190..17951315 766..641 630 100 Minus
X 23542271 X 17952677..17952774 445..348 490 100 Minus
X 23542271 X 17949955..17950094 1053..918 320 90.1 Minus
X 23542271 X 18014262..18014310 57..9 245 100 Minus
Blast to na_te.dros performed on 2014-11-27 20:20:08 has no hits.

FMO11446.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-09 10:06:15 Download gff for FMO11446.5prime
Subject Subject Range Query Range Percent Splice Strand
Sh-RD 275..1337 9..1067 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:48:03 Download gff for FMO11446.5prime
Subject Subject Range Query Range Percent Splice Strand
Sh-RD 275..1337 9..1067 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:19:18 Download gff for FMO11446.5prime
Subject Subject Range Query Range Percent Splice Strand
Sh-RD 275..1337 9..1067 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:19:18 Download gff for FMO11446.5prime
Subject Subject Range Query Range Percent Splice Strand
X 17951192..17951313 643..764 100 <- Minus
X 17951415..17951610 446..642 99 <- Minus
X 17952677..17952773 349..445 100 <- Minus
X 17952988..17953156 180..348 100 <- Minus
X 17953223..17953346 56..179 100 <- Minus
X 18014264..18014310 9..55 100   Minus
X 17950611..17950764 765..919 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:48:03 Download gff for FMO11446.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 17844644..17844797 765..919 99 <- Minus
arm_X 17845225..17845346 643..764 100 <- Minus
arm_X 17845448..17845643 446..642 99 <- Minus
arm_X 17846710..17846806 349..445 100 <- Minus
arm_X 17847021..17847189 180..348 100 <- Minus
arm_X 17847256..17847379 56..179 100 <- Minus
arm_X 17908297..17908343 9..55 100   Minus