FMO11446.5prime Sequence
1137 bp (1010 high quality bases) assembled on 2011-12-09
> FMO11446.5prime
CAGTCGACATGGCACACATCACGACGACGCACGGCAGCTTAAGCCAAGCG
ACAAGGTCTTTGCCCAAATTGAGCAGTCAAGACGAAGAAGGGGGGGCTGG
TCATGGCTTTGGTGGCGGACCGCAACACTTTGAACCCATTCCTCACGATC
ATGATTTCTGCGAAAGAGTCGTTATAAATGTAAGCGGATTAAGGTTTGAG
ACACAACTACGTACGTTAAATCAATTCCCGGACACGCTGCTTGGGGATCC
AGCTCGGAGATTACGGTACTTTGACCCGCTTAGAAATGAATATTTTTTTG
ACCGTAGTCGACCGAGCTTCGATGCGATTTTATACTATTATCAGAGTGGT
GGCCGACTACGGAGACCGGTCAATGTCCCTTTAGACGTATTTAGTGAAGA
AATAAAATTTTATGAATTAGGTGATCAAGCAATTAATAAATTCAGAGAGG
ATGAAGGCTTTATTAAAGAGGAAGAAAGACCATTACCGGATAATGAGAAA
CAGAGAAAAGTCTGGCTGCTCTTCGAGTATCCAGAAAGTTCGCAAGCCGC
CAGAGTTGTAGCCATAATTAGTGTATTTGTTATATTGCTATCAATTGTTA
TATTTTGTCTAGAAACATTACCCGAATTTAAAGCATTACAAGGTGTTCAA
TACAACAACAAATGGCACAAAAATCGAGGAAGACGAGGTGCCTGACATCA
CAGATCCTTTCTTCCTTATAGAAACGTTATGTATTATTTGGTTTACATTT
GAACTAACTGTCAGGTTCCTCGCATGTCCGAACAAATTAAATTTCTGCAG
GGATGTCATGAATGTTATCGACATAATCGCCATCATTCCGTACTTTATAA
CACTAGCGACTGTCGTTGCCGAAGGAGGAGGATACGTTAAATCTTCCAAA
AGCGCCAGTCAGTCCACAGGACAAGTCATCGAATCAGCTATGTCCTTGGC
ATATTACGAGTGAATACGATTAGTTCGAGTATTTCGATATTTAAGTTATC
TAAGCATTCGAAGCTTACAATAATTAGGACGAACTTCTGAAGCCTCAATG
CGGATTAAGTTACTATAGTTCTAATATAGGCTCGTACTTTTCCATCGCGC
TTATTTGCGGACTGAACGAAATTACCTATCTCTCAGT
FMO11446.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:20:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sh-RD | 2442 | CG12348-RD | 275..1321 | 9..1053 | 4955 | 98.7 | Plus |
Sh-RS | 3836 | CG12348-RS | 1496..2497 | 54..1053 | 4730 | 98.6 | Plus |
Sh-RT | 2781 | CG12348-RT | 787..1787 | 55..1053 | 4725 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:20:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 17951412..17951613 | 645..443 | 965 | 99.5 | Minus |
X | 23542271 | X | 17952986..17953156 | 350..180 | 855 | 100 | Minus |
X | 23542271 | X | 17950610..17950768 | 920..761 | 750 | 99.4 | Minus |
X | 23542271 | X | 17953221..17953348 | 181..54 | 640 | 100 | Minus |
X | 23542271 | X | 17951190..17951315 | 766..641 | 630 | 100 | Minus |
X | 23542271 | X | 17952677..17952774 | 445..348 | 490 | 100 | Minus |
X | 23542271 | X | 17949955..17950094 | 1053..918 | 320 | 90.1 | Minus |
X | 23542271 | X | 18014262..18014310 | 57..9 | 245 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:20:08 has no hits.
FMO11446.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-09 10:06:15 Download gff for
FMO11446.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sh-RD | 275..1337 | 9..1067 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:48:03 Download gff for
FMO11446.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sh-RD | 275..1337 | 9..1067 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:19:18 Download gff for
FMO11446.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sh-RD | 275..1337 | 9..1067 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:19:18 Download gff for
FMO11446.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 17951192..17951313 | 643..764 | 100 | <- | Minus |
X | 17951415..17951610 | 446..642 | 99 | <- | Minus |
X | 17952677..17952773 | 349..445 | 100 | <- | Minus |
X | 17952988..17953156 | 180..348 | 100 | <- | Minus |
X | 17953223..17953346 | 56..179 | 100 | <- | Minus |
X | 18014264..18014310 | 9..55 | 100 | | Minus |
X | 17950611..17950764 | 765..919 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:48:03 Download gff for
FMO11446.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 17844644..17844797 | 765..919 | 99 | <- | Minus |
arm_X | 17845225..17845346 | 643..764 | 100 | <- | Minus |
arm_X | 17845448..17845643 | 446..642 | 99 | <- | Minus |
arm_X | 17846710..17846806 | 349..445 | 100 | <- | Minus |
arm_X | 17847021..17847189 | 180..348 | 100 | <- | Minus |
arm_X | 17847256..17847379 | 56..179 | 100 | <- | Minus |
arm_X | 17908297..17908343 | 9..55 | 100 | | Minus |