FMO11447.5prime Sequence
830 bp (697 high quality bases) assembled on 2011-12-09
> FMO11447.5prime
CAGTCGACATGCACCAAGTTGGCAGTACCAACATGATGAAGATTCAATCG
ATTGCTCAGTTATCGATAACCATGGACGCGGGCACCAAAATCCTAGTTGT
GGGCGATGTGCGAGGTCGCTTCAAGCAGCTATTTCAGCGCGTGGAGCAGG
TCAACAAAAAAGCGGGACCCTTCGAAATCCTTTGCTGCGTCGGTGACTTC
TTCGGGGAGGACAAGCAAAACGAGGAACTGATTGCCTACAAAAATGGTTT
TAAGCATATCACTGTTCCCACCTATATCCTGGGACCCAACCAAAGGGAGC
ATGAAAAATACTTTGAAAATCTGACGGACGGTGAAATCTGCACCAATCTT
ACGTATCTTGGTCGACGTGGGGTCTACACGCTGAGCAGTGGTGTTAAAAT
TGCCTATCTAAGTGGTTTGGAGGCACAGGGCACTGCAGATTCCGCTGGCT
CGGAACACGAGTTCACCAAAGCCGATGTCATCGCTGTGAGGAACTCATGT
TTGGTGTCCAAGAACTGCTCCACAGAGTACCGCGGTGTGGATGTGCTCCT
AACATCGCAATGGCCCTTTGGTATGCAGGAGAAGGAAAACGCCACAGCAT
CCAAGTTGGTATCATTTCTTTGTCGTGAAATAAAGCCGCGCTATCACTTT
GTGCCATTAATGGAACCACCCTACGAAAGCCCACCCTTTCGGATGCCCAA
AGTTGAGAATACCCAGTTGAACTGTGGCACTCCTTCATTTCCCTTGCGGA
GTGGGAAATGCGAAAAGCCAGTACATCTATGCACCTCAGCCTGAAGCAGT
AACATTCACGCTTATTGACTAGCGCGAAGA
FMO11447.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:20:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7741-RA | 3158 | CG7741-RA | 1406..2237 | 9..830 | 3700 | 97.5 | Plus |
| CG7741-RB | 1708 | CG7741-RB | 1..787 | 54..830 | 3475 | 97.3 | Plus |
| CG7741-RC | 1703 | CG7741-RC | 1..782 | 54..830 | 3390 | 96.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:20:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11303820..11304152 | 259..591 | 1665 | 100 | Plus |
| 2R | 25286936 | 2R | 11303596..11303762 | 92..258 | 835 | 100 | Plus |
| 2R | 25286936 | 2R | 11304208..11304418 | 591..797 | 535 | 91.1 | Plus |
| 2R | 25286936 | 2R | 11303450..11303532 | 9..91 | 415 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:20:15 has no hits.
FMO11447.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-09 10:06:16 Download gff for
FMO11447.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7741-RA | 1395..2231 | 1..829 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:48:06 Download gff for
FMO11447.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7741-RA | 1400..2236 | 1..829 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:19:21 Download gff for
FMO11447.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7741-RA | 1400..2236 | 1..829 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:19:21 Download gff for
FMO11447.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11304208..11304456 | 591..829 | 91 | | Plus |
| 2R | 11303444..11303532 | 1..91 | 95 | -> | Plus |
| 2R | 11303596..11303762 | 92..258 | 100 | -> | Plus |
| 2R | 11303820..11304151 | 259..590 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:48:06 Download gff for
FMO11447.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7190949..7191037 | 1..91 | 95 | -> | Plus |
| arm_2R | 7191101..7191267 | 92..258 | 100 | -> | Plus |
| arm_2R | 7191325..7191656 | 259..590 | 100 | -> | Plus |
| arm_2R | 7191713..7191961 | 591..829 | 91 | | Plus |
