FMO11448.5prime Sequence
1142 bp (1024 high quality bases) assembled on 2011-12-09
> FMO11448.5prime
CAGTCGACATGTTAATAGCAAGCGGCTTCTTACTGTTTCAGTTTCTTTCA
TACGGTTTGGGAGTTCCACCCTTGGTCAGAATTGGAGCTATATTTTCAAA
CCAGCCTGGAATGTATAACTCGGAGTTAGCGTTTAGATACGCTATTCATA
GACTTAATATGGACAAAAGCCTTTTGCCTGAGACTACCGTTGATTACTAT
GTTGAATACGTAAACCGATTTGACTCTTTCGAGACAGTTCAAAAAGTGTG
CAAACTTATACGAGTTGGTGTTCAAGCTGTTTTTAGTCCAACTGACTCTG
TTTTGGCGACCCATATAAATTCAATTTGCGACGCACTGGACATCCCAAAC
ATAGGCCGGTCTGCCCATGACTTTTCTATTAACGTCTATCCATCGAAGCA
ACTTGTAAATTATGCCTTTAACGATGTAATACAGTATTTAAATTGGACAC
GCTTTGGGATATTGCATGAAAAAGAAAATGGAATCATAAACTTGCATCAG
CTATCCCGGTCATTTCACGGAGAAGTTCATATGCGACAAGTTTCTCGGGA
TTCATATGTATCCGCATTGAACGAATTTAAAGGAAAGGAAATACATAATA
TTATTATTGATACAAACTCGAACGGTATTTCCATATTGTTGAAAAATATA
TTGCAGCAACAAATGAATGAATACAAGTACCATTACTTGTTTACAAGCTT
CGATTTGGAAACTTATGATCTGGAAGACTTTAAATATAATTTCGTGAACA
TTACATCGTTTCGATTGGTCGACACTGCGGATGTTGGGGTAAAGCAAATC
TTGAAGGATATCGGATTGTATAGTCACCATATATTTAAAAAACCTTATTT
GAATCTACATATTAAAAAATCAACCATTCTTGAGTCAGAGCCAGCCCTAA
TGTTCGATTCGGTGTACGTTTTCGCGATTGATTGCAGACACTGCACAATC
ACACTCTTTACCCTTTTAAATAAAGCTGCGAGGAGAAACTCGTGGGACGG
GGGCCTAGTCTTATAACTACTTAATGCCGTGAATGAAGGTCTGACATGTC
CGAATCGTTTAAAGATGTAGCCGGTTCAGTTTCAGGTGGACTTATTAATA
ACACATTCATGTCAAAGTCGGTATGGACCTCATGGCACTCGA
FMO11448.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:20:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9935-RD | 2910 | CG9935-RD | 30..1137 | 2..1094 | 5015 | 97.6 | Plus |
| CG9935-RB | 2913 | CG9935-RB | 30..1137 | 2..1094 | 5015 | 97.6 | Plus |
| CG9935-RA | 2971 | CG9935-RA | 30..1137 | 2..1094 | 5015 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:20:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 4 | 1348131 | 4 | 642492..642728 | 884..648 | 1185 | 100 | Minus |
| 4 | 1348131 | 4 | 645948..646184 | 481..245 | 1185 | 100 | Minus |
| 4 | 1348131 | 4 | 637333..637569 | 648..884 | 1170 | 99.6 | Plus |
| 4 | 1348131 | 4 | 643989..644156 | 647..480 | 840 | 100 | Minus |
| 4 | 1348131 | 4 | 646233..646395 | 246..84 | 815 | 100 | Minus |
| 4 | 1348131 | 4 | 646444..646527 | 85..2 | 390 | 97.6 | Minus |
| 4 | 1348131 | 4 | 637626..637760 | 878..1006 | 380 | 94.1 | Plus |
| 4 | 1348131 | 4 | 642301..642435 | 1006..878 | 380 | 94.1 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:20:22 has no hits.
FMO11448.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-09 10:06:16 Download gff for
FMO11448.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9935-RC | 29..1111 | 1..1072 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:48:10 Download gff for
FMO11448.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9935-RA | 29..1111 | 1..1072 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:19:23 Download gff for
FMO11448.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9935-RA | 29..1111 | 1..1072 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:19:23 Download gff for
FMO11448.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 4 | 645949..646182 | 247..480 | 100 | <- | Minus |
| 4 | 646233..646394 | 85..246 | 100 | <- | Minus |
| 4 | 646445..646527 | 1..84 | 96 | | Minus |
| 4 | 642272..642428 | 885..1032 | 92 | <- | Minus |
| 4 | 642492..642728 | 648..884 | 100 | <- | Minus |
| 4 | 643989..644155 | 481..647 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:48:10 Download gff for
FMO11448.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_4 | 662898..663054 | 885..1032 | 92 | <- | Minus |
| arm_4 | 663118..663354 | 648..884 | 100 | <- | Minus |
| arm_4 | 664615..664781 | 481..647 | 100 | <- | Minus |
| arm_4 | 666575..666808 | 247..480 | 100 | <- | Minus |
| arm_4 | 666859..667020 | 85..246 | 100 | <- | Minus |
| arm_4 | 667071..667153 | 1..84 | 96 | | Minus |
