FMO11449.5prime Sequence
1157 bp (1044 high quality bases) assembled on 2011-12-09
> FMO11449.5prime
CAGTCGACATGCATTCGAGGCTAAAATTCTTGGCATATTTACATTTTATA
TGCGCCAGCAGCATTTTCTGGCCGGAATTTAGTTCAGCCCAGCAGCAGCA
ACAGACGGTATCGTTAACCGAGAAAATACCATTAGGTGCAATCTTCGAAC
AGGGAACGGATGATGTGCAATCAGCCTTTAAATATGCAATGCTCAATCAC
AATCTGAATGTGAGCTCTCGACGCTTCGAATTGCAGGCGTATGTCGATGT
CATCAATACAGCGGATGCATTCAAATTATCCCGCCTGATTTGCAATCAAT
TCTCGCGCGGAGTCTACTCAATGCTGGGCGCCGTATCGCCGGACTCGTTT
GACACATTGCACTCGTACTCGAATACGTTCCAAATGCCATTTGTGACGCC
CTGGTTTCCCGAGAAGGTGCTTGCGCCGTCGTCGGGTCTCCTGGATTTCG
CTATCAGCATGCGTCCGGATTATCATCAGGCGATTATCGATACCATCCAG
TACTACGGCTGGCAGAGCATTATTTATCTCTACGACTCGCACGATGGCTT
ACTACGGCTGCAGCAAATCTATCAAGAACTGAAGCCCGGAAATGAAACGT
TCCGTGTGCAAATGGTGAAACGCATCGCCAACGTAACGATGGCCATTGAA
TTTTTGCACACGCTGGAGGATTTGGGTCGCTTTAGCAAAAAGCGCATCGT
GCTCGACTGCCCGGCGGAATGGCCAAAGAGATCATCGTCCAGCATGTGCG
GGACATCAAGCTGGGCCGGCGCACCTATCATTACCTGCTCAGCGGACTGG
TCATGGACAACCACTGGCCCAGCGATGTGGTCGAGTTTGGGGCCATCAAC
ATCACCGGCTTTCGGATTGTCGACTCTAATCGGAGGGCGGTGCGTGATTT
CCACGACAGCCGGAAACGTTTGGAGCCGAGCGGCCAAAGCCAAAGCCAGA
CGCAGGGGGGCCCAACAGCTTGCGCCATTTCGGCCCAGGCTGCACTGATG
TTACGAATGCGGTTTTGGTGCTCGTCAGGCCTTCAATCGCATTTTGCGCA
GAGCCCGGAATTAGTTTCGGTCCATCATCTGCAGCGCCGGAGCACGAGGC
AGCTCTCTCAATCGCCACGTCACAATGATTCAGTCCTACTCGATGCAACT
CAAGCAG
FMO11449.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:22:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GluRIA-RA | 3810 | CG8442-RA | 539..1641 | 9..1105 | 5135 | 98.3 | Plus |
| GluRIB-RD | 5439 | CG43743-RD | 865..1680 | 110..924 | 1340 | 78 | Plus |
| GluRIB-RC | 7186 | CG43743-RC | 865..1680 | 110..924 | 1340 | 78 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:22:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6631300..6631556 | 546..801 | 1235 | 99.6 | Plus |
| 3L | 28110227 | 3L | 6631866..6632041 | 799..973 | 830 | 99.4 | Plus |
| 3L | 28110227 | 3L | 6626419..6626573 | 134..288 | 775 | 100 | Plus |
| 3L | 28110227 | 3L | 6628874..6629006 | 415..547 | 665 | 100 | Plus |
| 3L | 28110227 | 3L | 6626931..6627060 | 289..418 | 650 | 100 | Plus |
| 3L | 28110227 | 3L | 6624570..6624699 | 9..138 | 650 | 100 | Plus |
| 3L | 28110227 | 3L | 9258098..9258228 | 289..419 | 370 | 85.5 | Plus |
| 3L | 28110227 | 3L | 9257402..9257556 | 134..288 | 340 | 81.3 | Plus |
| 3L | 28110227 | 3L | 9258823..9258955 | 415..547 | 260 | 79.7 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:22:05 has no hits.
FMO11449.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-09 10:06:25 Download gff for
FMO11449.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Glu-RI-RA | 528..1642 | 1..1109 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:48:59 Download gff for
FMO11449.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GluRIA-RA | 530..1644 | 1..1109 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:20:03 Download gff for
FMO11449.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GluRIA-RA | 530..1644 | 1..1109 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:20:03 Download gff for
FMO11449.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6626421..6626573 | 136..288 | 100 | -> | Plus |
| 3L | 6626931..6627058 | 289..416 | 100 | -> | Plus |
| 3L | 6628876..6629005 | 417..546 | 100 | -> | Plus |
| 3L | 6631301..6631554 | 547..799 | 99 | -> | Plus |
| 3L | 6631867..6632052 | 800..982 | 98 | -> | Plus |
| 3L | 6624561..6624696 | 1..135 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:48:59 Download gff for
FMO11449.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6617661..6617796 | 1..135 | 97 | -> | Plus |
| arm_3L | 6619521..6619673 | 136..288 | 100 | -> | Plus |
| arm_3L | 6620031..6620158 | 289..416 | 100 | -> | Plus |
| arm_3L | 6621976..6622105 | 417..546 | 100 | -> | Plus |
| arm_3L | 6624401..6624654 | 547..799 | 99 | -> | Plus |
| arm_3L | 6624967..6625152 | 800..982 | 98 | -> | Plus |
