FMO11450.5prime Sequence
1136 bp (1027 high quality bases) assembled on 2011-12-09
> FMO11450.5prime
CAGTCGACATGCATTGCCTGGTGATACTCGGATTTCTGCTGGGTAGCCTG
GTGGCATTCAGCTGGGCAGGAGTCACAACCCAGCCACCGCCACTCATACG
CACCCTAAGTGCCGGCGGAGACATAGGACCCCAGTTCGACGTGGGGAAGA
CCAAGGAACCCGAAGACGCGGAATTCTGGCACAACGTGGGCCTGAGGCAG
CTGGAGAAGACCATTAAGCAGGCGCAGCGCGTGAAGGAGGACTCCTACCA
GAAAAAGGCGCGGAATATCATCATCTTCATCGGAGACGGCATGGGAATAT
CCACGATCAGTGCTGGTCGCATCTACAAGGGGCAGTACCTGAAGCATGGT
TACGGCGAGGAGGAAACCCTCGTCTTCGACGATTTCCCAAACACTGGAAT
GGCCAAAACCTACAACGTGGACAAACAAGTGCCGGATTCGGCGGGCACTG
CCACTGCGATCTTCTCGGGTTCGAAAACCCATTACGGAGCCATTGGAATG
GACGCCACCCGCTCCAAGAAGAATGGGCAGCAAGGCAGGGTCCAGAGCGT
CATGGAGTGGGCCCAGAAGGAGGGCAAGCGCACCGGCGTGGTCACCACAA
CCAGGATCACGCACGCCACGCCCGCCGCCACCTACGCCCACATCTACGAC
CGGGACTGGGAGTGCGACACGGAAGTGCCCGCGGAATCGGTGGGCTTTCA
TGTCGATATTGCCCGTCAGTTGGTGGAGAATGCTCCGGGAAATCGGTTCA
ATGTGATCCTGGGCGGAGGAATGTCGCCCATGGGCATTCTGAATGCCTCC
GAGGTGAAGACTACTATTTTCGAAGGACCCACGGAAACAATTTTGCACCC
GCGGTGATAACAGAAACCTTTCCTGCCGAGTGCTGGGCCCATCACGCCAA
CGACACAGTTTCCTCCAGCATTGGTACATAACCGTAAGGATCTGCTTAAT
TGTGAATGTCAGAAGTGACCATTTGATGGGGCCTGTTCCCGAAACATCAC
ATTTACGTACTCCATAGCCAGGGAGCGGGAGAGCTTCCCTGCAAGAATTG
ACTGAAACGTCTAGATCTTGGAAGGGGCGAATGAATCAACGGCCTTGTGC
TTCCTGGTCAAAGAGCGTAGCCAATTCGAACTCAGG
FMO11450.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:22:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Aph-4-RA | 2153 | CG1462-RA | 235..1337 | 9..1108 | 4905 | 97.3 | Plus |
| Aph-4-RB | 2021 | CG1462-RB | 258..1205 | 164..1108 | 4130 | 96.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:22:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31050961..31051611 | 408..1059 | 2590 | 96.5 | Plus |
| 3R | 32079331 | 3R | 31050650..31050893 | 164..407 | 1220 | 100 | Plus |
| 3R | 32079331 | 3R | 31049163..31049319 | 9..165 | 785 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:22:13 has no hits.
FMO11450.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-09 10:06:26 Download gff for
FMO11450.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aph-4-RA | 225..1281 | 1..1059 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:49:04 Download gff for
FMO11450.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aph-4-RA | 228..1284 | 1..1059 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:20:07 Download gff for
FMO11450.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aph-4-RA | 228..1284 | 1..1059 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:20:07 Download gff for
FMO11450.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31050652..31050893 | 166..407 | 100 | -> | Plus |
| 3R | 31049156..31049319 | 1..165 | 97 | -> | Plus |
| 3R | 31050961..31051611 | 408..1059 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:49:04 Download gff for
FMO11450.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26876374..26876615 | 166..407 | 100 | -> | Plus |
| arm_3R | 26874878..26875041 | 1..165 | 97 | -> | Plus |
| arm_3R | 26876683..26877333 | 408..1059 | 97 | | Plus |
