FMO11451.5prime Sequence
1123 bp (1029 high quality bases) assembled on 2011-12-09
> FMO11451.5prime
CAGTCGACATGCTCGCGTACACCCACGGCACATGGCTCCTGCTCCTGCTG
CTCCTTGTAGCAGGCGCATGCGCGCGGCCAGAAATAGCACACACACCGGA
TCCGGCTGCACTAGGCGAGGAGTCTACTCCACATGCACACGCACATCCAC
AGGCTCGCCATCATCACCATGCCCATCCCCATGCGCCGCTGAAGGAAGAT
GAGCAGGGAACAGCAATACCTGCTCCCATCCTAACAACTGATAACGTGGG
CATTGGGGAAACCACGACGGCATCAAGTTTGGCCGAGACGCAAAGCATGT
CCGATCCGGGATCTGTGACAGACACAACATCCACAAGCACATCGCACTCC
ACCTCGACCACGTCGACCACTTCGCCCGCACCCCTTCCGCCGGCTGCTCC
CGAACAGCCCGAGTATCTGAAGCACTGCTTCTATGCAGAAGAGCAGCTGT
GTGGCCACACCTTTGACGGACGAGCCGAAACCTCCGAGGGCCAGGGCTCG
ACAGTCGCGCAGTCGGAAGCCCAGAACCGAGGAGGACAGGGGAACAGCCA
GTGCCAGTGCAGGGAGCACCCGACGCGGCCAAACTCCTGGTACTGCTGCA
ACATATCGCAGCTGACGATGATCTCAAGCTGCAGCAACATATCCAAGTGG
ACCAACCTGCACGTGCGCAACATGACTGTGGAGGACATGGACCTCTCCAA
TCCAATATTCCGATCCCTGCAGTCGCTTGCCGTGACGGACGGCAATATCA
CTCGACTGGTGAACGCCTTTCCGCGGCTCTCGGCTCTTAAGTGCCTAAAC
ATATCAAACAACAACATCTCGGAGATCCACTCGAGGGCGGTGAAGGACGT
GCCCCATCTGGAGTTCTTCGGCATGTCGAACAACATCTCTCGCTGGTGCC
TCACCGAAACCAGAACAAGAACATTACGCTGGATATCAGTGGCAACATGC
GCATGCTGTGCACTCCGCTAAACGAGATAATAATACACCGGATTCTATTA
TTTCTGAACCCGAAGCACTCCTACTGTTCAGTTATAACGCCCACACCAAC
CTGGATTCAGTTCCACGACCAGGTGTCCGTGGAGCAGCTGGAAACGAAAA
GCCGGGTGTGTGACACTATTGCC
FMO11451.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:22:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| hfw-RB | 3038 | CG3095-RB | 347..1453 | 5..1114 | 5155 | 98.2 | Plus |
| hfw-RA | 2540 | CG3095-RA | 347..1453 | 5..1114 | 5155 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:22:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1670816..1671729 | 27..939 | 4520 | 99.9 | Plus |
| X | 23542271 | X | 1671783..1671936 | 936..1092 | 330 | 88 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:22:20 has no hits.
FMO11451.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-09 10:06:26 Download gff for
FMO11451.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hfw-RA | 320..1430 | 1..1114 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:49:07 Download gff for
FMO11451.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hfw-RA | 343..1453 | 1..1114 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:20:11 Download gff for
FMO11451.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hfw-RA | 343..1453 | 1..1114 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:20:11 Download gff for
FMO11451.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1669912..1669937 | 1..26 | 92 | -> | Plus |
| X | 1670816..1671729 | 27..939 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:49:07 Download gff for
FMO11451.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1563945..1563970 | 1..26 | 92 | -> | Plus |
| arm_X | 1564849..1565762 | 27..939 | 99 | -> | Plus |
