FMO11452.5prime Sequence
1109 bp (997 high quality bases) assembled on 2011-12-09
> FMO11452.5prime
CAGTCGACATGAAAGATTTGAAAACGGAGATCCTAGTGAGCGGCGGCCTG
CCGAAACTGGAGACCAGCAGGTGTGCCGGCAGTGGCGAGGCGCTGCTAAA
GCCATCCTTGCTGCCCATGGCATTGGAATCGTCTGAGCTCTCTCCGGATC
GGAAGGCCCGCGACAACTGGGGCAGTTCGCTGGAGTTCCTGATGTCCTGC
ATCGCCCTGAGCGTGGGATTAGGCAACGTGTGGCGGTTTCCATTTACGGC
CCTGGAAAACGGCGGAGGGGCATTCCTAATTCCGTACCTCGTCGTCCTGT
TTGTGGTGGGAAAGCCGATTTACTACATGGAGATGCTGCTGGGACAGTTC
TCCAGTCGTGGCATCGTGCAGGTCTTTGACTTTGCGCCCCTCATGAGAGG
TGTGGGCTATGCTCAGCTATTGGCCCTAGGCGTTTTGGCCACGTATTATG
CTTCAGTGATGGCCCTAACTCTGCGATACTTTTTCGATTCCTTCGCATCG
GAGTTGCCCTGGAGCTTCTGTCGCGAGGAGTGGGGTGACGGGTGCGTAAG
TGCATCTGGGGGGCAGCCTCTTCAGGGCCAACTGTCGCGTAACTTCAGCT
CCTCCACGCAACTCTACTTGCAACGCATCGTGCTGAATGAAACGGATTCC
CTGGAGGAGGGCATCGGATATCCCAGTGGTAGTTTGGCCTTAATGCTGGG
CATTTCGTGGCTAACCGTAACACTAATCATCATTCGGGGAGTGAAGAGTT
CAGGAAAGGCGGCCTATGTCCTGCCCCTCTTTCCGTACGTTGTAATGTTT
ATCCTGCTCGTGAGAGCACTCACATTACCAGGTGCCTACGACGGAGTTAT
GTACTTTCTGACTCCACAGTGGGAGAACTTTTGGAGCCGCAGTGTGGTAC
ATGCCGTCACCCAGGTGTTCTTCTCCCTGCCGTCTGTTTCGGGGTGATCA
TCATGTACTCCTCGTACAACCGTTTCGGTCACATTGTCTATCGGGATGCA
CATAGTACACCCCTGGACCAATCACCTCACCTGCTCCTCGGGTGTGAATT
ACTCTTTGGAATCTGGAACTGCTTCACGCATTCGGGAACCAAGAATGCAA
GTGTGGTAA
FMO11452.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:22:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4476-RB | 2400 | CG4476-RB | 347..1405 | 9..1063 | 4920 | 98.2 | Plus |
| CG1698-RB | 2246 | CG1698-RB | 493..846 | 183..536 | 480 | 76.1 | Plus |
| CG1698-RA | 4106 | CG1698-RA | 2353..2706 | 183..536 | 480 | 76.1 | Plus |
| CG1698-RB | 2246 | CG1698-RB | 1056..1306 | 737..983 | 390 | 78.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:22:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9213396..9214001 | 398..999 | 2785 | 98.8 | Plus |
| 3L | 28110227 | 3L | 9212872..9213202 | 71..401 | 1655 | 100 | Plus |
| 2R | 25286936 | 2R | 9795678..9795897 | 183..402 | 485 | 81.4 | Plus |
| 3L | 28110227 | 3L | 9212668..9212730 | 9..71 | 315 | 100 | Plus |
| 2L | 23513712 | 2L | 14848711..14848892 | 362..181 | 310 | 78 | Minus |
| 2R | 25286936 | 2R | 9796699..9796949 | 737..983 | 290 | 78.1 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:22:24 has no hits.
FMO11452.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-09 10:06:27 Download gff for
FMO11452.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4476-RB | 336..1350 | 1..1011 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:49:09 Download gff for
FMO11452.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4476-RB | 340..1354 | 1..1011 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:20:11 Download gff for
FMO11452.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4476-RB | 340..1354 | 1..1011 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:20:11 Download gff for
FMO11452.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9212661..9212730 | 1..71 | 94 | -> | Plus |
| 3L | 9212873..9213200 | 72..399 | 100 | -> | Plus |
| 3L | 9213398..9214037 | 400..1032 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:49:09 Download gff for
FMO11452.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9205761..9205830 | 1..71 | 94 | -> | Plus |
| arm_3L | 9205973..9206300 | 72..399 | 100 | -> | Plus |
| arm_3L | 9206498..9207137 | 400..1032 | 97 | -> | Plus |
