FMO11454.5prime Sequence
1097 bp (993 high quality bases) assembled on 2011-12-09
> FMO11454.5prime
CAGTCGACATGCCGAGCTCACGACGTGCGATCCTGAGGCACATATTGTCG
GGCATTTGCACCAAGATGAATCGCACCAAGTCGGTGCCCACTGACGTCAT
GGAGACGCCGCTAAACCGATGCCTCAACACCTTCGACATCGCTCTATTGG
GCATTGGCCATATGGTTGGCGCTGGCATCTACGTGCTGACTGGAACTGTG
GCCAAGGAAATGGCCGGACCCGGGATCATATTATCCTTCATCCTGGCCGG
ATTTATTTCGATGCTGGCCGCCCTATGTTACGCGGAGTTCGGGACTCGAG
TGCCCAAGGCGGGATCGGCCTATGTGTACACCTACATCTCGATGGGTGAA
TTCTGGGCCTTCGTCATCGGCTGGAATATCCTGCTGGAGCATATGCTGGG
TGCAGCTTCGGTGGCCAGGGCCTGGAGTGGATACGTGGATTCAATGCTGG
GCGGTTGGATTGGGAACACAACGCTGGAGCTAACGGGTGGCATCCACGAG
CCCGGATTGGCCCAATACCCCGACGTCTTAGCCTTCCTGGTCTGCATTGT
TTACGCGGCTGCTCTGGCCGGAGGAGTAAAGGCCACGGCGGTGTTTAACA
GTCTCCTCACCCTGGTCAATATAGCCGTGATGGTGCTGGTCATCAGCGTG
GGATTCTGGTATGCGGATGGTAAGAATTGGTCCGAGGCTGAGGGTGGATT
TCTGCCCTACGGCGTTGGAGGAGTCATCGCCGGTGCAGCCACCTGTTTCT
ACGCCTTTCGTGGGCTTCGATTCCATAGCCACTTCCGGTGAGGAGGCCAA
AAACCCATCGGTATCCATACCCGTGGCCACTGTGATCTCATTGTTCGTGG
TGACAGTGGGCTACATCCCTTGTCAGCGCCGCTCTGACCCTTTATGATTC
CCATCAGTGAGATCAATCCGGCTGCCTCATTGCCCGGAGGCATTTGGGCA
ATTGAACCTCTCTGGCAGTACCTTATCTCCATCGGAGCTCTGTGTGATTG
ACACCACCCTGTGGATTCCATGTCGCCCTGCCCGCTGCATGTACGCCATG
TCCTTCGGATGGATGCTCTTCGCTGTTTGGGAAAGATACGACCACCA
FMO11454.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:22:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13248-RA | 2856 | CG13248-RA | 163..1247 | 9..1087 | 4955 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:22:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20408746..20409655 | 1054..150 | 3930 | 97.4 | Minus |
| 3L | 28110227 | 3L | 20410262..20410404 | 151..9 | 715 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:22:42 has no hits.
FMO11454.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-09 10:06:28 Download gff for
FMO11454.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13248-RA | 162..1250 | 1..1087 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:49:16 Download gff for
FMO11454.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13248-RA | 159..1247 | 1..1087 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:20:18 Download gff for
FMO11454.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13248-RA | 159..1247 | 1..1087 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:20:18 Download gff for
FMO11454.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20408725..20409654 | 151..1075 | 97 | <- | Minus |
| 3L | 20410263..20410408 | 1..150 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:49:16 Download gff for
FMO11454.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20401825..20402754 | 151..1075 | 97 | <- | Minus |
| arm_3L | 20403363..20403508 | 1..150 | 97 | | Minus |
