FMO11456.5prime Sequence
1137 bp (1029 high quality bases) assembled on 2011-12-09
> FMO11456.5prime
CAGTCGACATGGAAGCCGCATCACCGAGGGAAACCCAGAAGAACCCGAAT
CCGATCGAGGCGCTGAGCAAAGATGAAATCATCAGCAAATACAAAGGCCT
GCTCAACATCGCTAAAAAGGCGAAACAGGCAAAAGATGAACTCACCGAGG
AAAATCACCGACTCAAGGATGCCCTTAAACGGGCGGCGGAGAAGCAGAGC
AGCCTGCCAGCCATGCAGGAAATGGTCCAGGACTTCACCGATAAGAACCT
CATCCTCACCGAGGAAGTGAATAATCTGAAACGAAAGACCAAAGAGGATG
CCGATCGACTGACGCAATTCGAGATCGAGAACGAGAGCCTAAAGCGCCAA
CTTGGGCGACTGAGTGATGAAAACGATGCCCTCCTTGCCAATGTGGATCG
CATGGAAAAGGCTATGCAACAGGTCAATGCTCTGGGTAACGAGCAGCGCA
AGAATCTGGAACTTTTGGAAGTGGACATTGCCAAAATTAAGGAAGCGGAG
GCGGAAAACGCTAGTCTTCGCCAGCAAGTCGCCACGATGGAAGAAGAGTC
GAGTGTGCTGCAGCAAAAGTACCAAAACATCAAGGAACTTAACTCTGAGC
AACGCAAGAAGTTTAATTCTCTAAAGGACCGCTTCATTGATGTACACCGC
AAGTTGAAGAACCTCAAGGAGTGCAAGTGCGTGCTGCTGGAAACGCAGCA
CGAGTACGCCGCATCCGTTTCCAAATGGCAGGTGGAGATTATCAAAGCTT
CGCAACTGTTGTGCGCAAAGATGGCATCCCTGCAGGCCGAGAATGAAAAA
CTGAAGCTGAACAATGGAAAGTCAGACAATAATCCTCAAACAATTGACAC
TGGAATTGACCGCAAGCGCTTACTGCAAGAGTTCAGGAAATGGATCGGCT
AGCCAAATAGTGAAGCAGAGCAAAGACCAAAGGAGCATTTGAATGGGGAG
TACCTACTTAGAAGATAACCGCTCCTCGAGAGCTTGCAGTCATTATAAGC
AGCAGCATAGATTGACCAGGAACATTGATAGTGGTACGAGGAGCAGGAAA
CACCAAATTCACGCAGACCTTATGTAAGCTTATCGACAGCTTGATCAAAT
GCACTTGTTCAAGGTCATTGCAGGAGCCGTTATAATC
FMO11456.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:23:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GCC185-RB | 4040 | CG3532-RB | 158..1315 | 7..1137 | 4925 | 96.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:22:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12011182..12012077 | 138..1024 | 3945 | 98.1 | Plus |
| 3R | 32079331 | 3R | 12011020..12011122 | 36..138 | 515 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:22:59 has no hits.
FMO11456.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-09 10:06:29 Download gff for
FMO11456.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3532-RB | 142..1267 | 1..1103 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:49:24 Download gff for
FMO11456.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3532-RB | 152..1277 | 1..1103 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:20:23 Download gff for
FMO11456.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GCC185-RB | 152..1277 | 1..1103 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:20:23 Download gff for
FMO11456.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12010923..12010960 | 1..38 | 92 | -> | Plus |
| 3R | 12011023..12011122 | 39..138 | 100 | -> | Plus |
| 3R | 12011183..12012170 | 139..1103 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:49:24 Download gff for
FMO11456.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7836745..7836844 | 39..138 | 100 | -> | Plus |
| arm_3R | 7836645..7836682 | 1..38 | 92 | -> | Plus |
| arm_3R | 7836905..7837892 | 139..1103 | 96 | | Plus |
