FMO11458.5prime Sequence
1131 bp (1029 high quality bases) assembled on 2011-12-09
> FMO11458.5prime
CAGTCGACATGGAGGAAGTTCTCGAGACGATGCAGCTGGAGAACATGCAC
TGCGATGTGTGCGAGGGTACCACCTTCCAGGAGCGCGAGGGATTCTACTA
CTGCGTAGAGTGTGGCACACAGAAGGATCAGATTCGTGCAGTGGACATTA
CCGCCGAGGATAACTTTGATGACACGGCAGCAGGCCGATATACAGCCAGG
ACGATCCGACAGAAGAAGGATACGGAGAAGGAGGATGAGGACGATATCAC
CTCGTGGGAATTCTACAACTACGTGCTGCGCGGCTTCCTCCAGGAGCTGC
TCAACATGGGCGCCAAGCCGGAGCTCAAACTGATGACCCTGCAAGTGTGG
GCGGCTTACTTGGACAGCATGGAGGTGGCCTTCAGCAAGAGCAACAAGAC
GGGACTGCCTAAACTGAATGTGCGGGCGCTGCCCATAGATGCCCGCATCA
TCTACAACCATAAGACATTCAAGAAAGGCAAAAAGGGCAAGAAGAGCACT
CTAACGGGTGACCCAAATGACGAGCGCGCCAAGTTCAGATTGTGGAACAG
AACTAAGCGCAATCTAGACGCCTCCGGCTACCGCTCGCACGGAGGAGCTT
CAGAGTCCGAAGGGGAGCAGAGTCTCCACCTGCAATGGTCAATGCGTGCA
CGCAAGTCCTTGAAGCGCCATATGCCGCTGAAGCACCTGGACAAGCATAG
CCGCGACAGCAAGGGTAGTATGTCGTGCCACAGCTTGAGACCGAGGGTCA
AGCAGCTCCACAATTTTGATCGTAACATCTACTGCCTGAATATTATCAAG
TTGTATGTGGTGCTGGGCATAGCCCTTAATATGGTGGAGGATGATATACA
GCTATCGGACTTGCTGCGCTTCATTGATGAGGAGCACTTGACCAAGCGGT
GCATGCTTAACTATCTGCCCGGAAATGTGCGGCCAAGGCCAAGCCACTGC
TCAAAGATATGGAGCTCAGCAAATGAAGACAAGGTTACCAACAGCTTCTG
CGTGTAACATCGCGTGTATGTCCACGATTCATAACCTGTCTGAATATTCA
AAACCCGAACTGCACTCCCTTGCGGAGCGAAATATTTCTGGATGGGCACT
GGCCCACCTCGGCTACTGAAGTACTGTGAAT
FMO11458.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:21:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TAF1B-RC | 3399 | CG6241-RC | 114..1238 | 9..1131 | 5210 | 98.1 | Plus |
| TAF1B-RA | 2941 | CG6241-RA | 114..1238 | 9..1131 | 5210 | 98.1 | Plus |
| TAF1B-RB | 3046 | CG6241-RB | 692..1343 | 482..1131 | 2845 | 96.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:21:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10143644..10144071 | 436..9 | 2140 | 100 | Minus |
| 3R | 32079331 | 3R | 10142496..10142936 | 993..556 | 2030 | 98.4 | Minus |
| 3R | 32079331 | 3R | 10143468..10143588 | 557..437 | 605 | 100 | Minus |
| 3R | 32079331 | 3R | 10143363..10143438 | 557..482 | 380 | 100 | Minus |
| 3R | 32079331 | 3R | 10142270..10142402 | 1124..991 | 255 | 86 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:21:40 has no hits.
FMO11458.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-09 10:06:23 Download gff for
FMO11458.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6241-RA | 104..1228 | 9..1131 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:48:48 Download gff for
FMO11458.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6241-RA | 114..1238 | 9..1131 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:19:52 Download gff for
FMO11458.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TAF1B-RA | 114..1238 | 9..1131 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:19:52 Download gff for
FMO11458.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10143644..10144071 | 9..436 | 100 | | Minus |
| 3R | 10142494..10142934 | 558..994 | 98 | <- | Minus |
| 3R | 10143468..10143588 | 437..557 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:48:48 Download gff for
FMO11458.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5968216..5968656 | 558..994 | 98 | <- | Minus |
| arm_3R | 5969190..5969310 | 437..557 | 100 | <- | Minus |
| arm_3R | 5969366..5969793 | 9..436 | 100 | | Minus |
