Clone FMO11459 Report

Search the DGRC for FMO11459

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:114
Well:59
Vector:pMK33-CFH-BD
Associated Gene/Transcriptdnt-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11459.5prime Sequence

1119 bp (1012 high quality bases) assembled on 2011-12-09

> FMO11459.5prime
CAGTCGACATGGAATCTGTGAATAAATGCGGTAAAAGCGCATCCACAAGA
AATTGTACGGTGAAAATGAGCCGGAAAATGTGGGTGCTTTCGCTGCTGGC
GCTGGCAGCGCTACAACTGCACTCGGGCAGCGAAGTGGCTGCACATTTGA
ATGTTTTCCTAAATCCCGTGGAAGTAATGCGTTTATTAGGCGTCTCTGCT
GAGGTTTACTACGTTCGCGAAGGTCATATAAATAACTACGCTTTGAACTT
CATTGTACCAGTTCCGGCGAATGTCAAGGACATTAGTTTCACCTGGCAGT
CGCTGGCGGGGCGTGGCCTTCCCTACAGCATCAATGTGGTCAGCTCCGAT
CAGGAAGTGCTTCCTCGACCGGCGATCAATGTGTCACACAGTGGGGAAAT
CCCCACGACCATACAAACCTGGTCCATTGCCCTCAAGTGCAGCGGATTGA
AAGCGGCGGAGGTGGATGTGACTGTCAGCCTGGAAGTGGTGCTCAACCGG
TCACTGAACAATGTAACTCATCTGGTGTTTCGGAGGAAGAAGATCTGTCT
TATGAATGACAGTGCCGAGGATTTGTCGGAGGATGTGGACGATCCCCAGT
TGCTGGAGACCGTAATGTTACCACCCACTGGATTGATCACCCTGGTCGTT
GGTGTTTCTGTGGCCATGGGATCTGTGTGCCTGCTCCTCATGATTGCCTA
TTGCGTCAAGGGAGCAGCCAACAAGAGGCAGCATCATCAACACGGAGGAC
AGCCCATGAGGACTTCGAGCTTTCAGAGACTAAATACCCATCCGCCCTGC
CAGTCTTCCATGGGATCGGCTGCTTATATGACGCCTTCGATTATAGCTCC
AATTCATGGCTCCTCCTTGCCACGGAAAGTTCCAGTTTCCGTAGAGCAGC
AACATCCGGAGGAGCTTCATCGCCGATTTCCGAGTTGACCGTGAGCGCTG
CAGGGTACGACTATCGAGTCTCCTGCAAGATGACGTTTGACGAGTTTATC
GTGGCACCTACACGACCCCTCAGGATGTTCTGGTCAACGGTGGCCAGCAA
GCTAGCCAATTGCAGGTGGCCTTCTCCCACTCAGAAGGAATGCTGCCTAT
GGCCCTTCATCCTGGAAAT

FMO11459.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:21:49
Subject Length Description Subject Range Query Range Score Percent Strand
dnt-RB 2639 CG17559-RB 389..1508 9..1117 5100 97.8 Plus
dnt-RA 2630 CG17559-RA 389..1508 9..1117 5100 97.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:21:47
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19340048..19340936 1068..188 3980 98.1 Minus
2L 23513712 2L 19362658..19362839 190..9 910 100 Minus
Blast to na_te.dros performed on 2014-11-27 20:21:48 has no hits.

FMO11459.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-09 10:06:24 Download gff for FMO11459.5prime
Subject Subject Range Query Range Percent Splice Strand
dnt-RA 386..1506 9..1119 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:48:52 Download gff for FMO11459.5prime
Subject Subject Range Query Range Percent Splice Strand
dnt-RA 389..1509 9..1119 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:19:56 Download gff for FMO11459.5prime
Subject Subject Range Query Range Percent Splice Strand
dnt-RA 389..1509 9..1119 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:19:56 Download gff for FMO11459.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 19339994..19340934 190..1119 97 <- Minus
2L 19362659..19362839 9..189 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:48:52 Download gff for FMO11459.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19339994..19340934 190..1119 97 <- Minus
arm_2L 19362659..19362839 9..189 100   Minus