FMO11460.5prime Sequence
1111 bp (985 high quality bases) assembled on 2011-12-09
> FMO11460.5prime
CAGTCGACATGGCTCAACCATCGCAATCGGGAGCCGCGCAGGCGCTCAAC
GGCCAGCATCCGGAGTTGGCCTTCGCGGATGCGGACACGGACGGAGATGA
GCGACTGGAGGAGCATGGGCAGGAGCAGGAGCAGCTCCAGCTACTGGGTG
CCATGCCCAGGAAGCAATCTCTCAGCGAGCGACGCAATGTGGATCTACCG
CATTTGAAGATGGTCAACGAAAAGGAGCCGGAGTCGGCGACGCCGTCGCC
GGAGGCCTTTGCACCGGGACTCCGACGCAATTCGATATCCATGCCCTCGG
GCATTAATGCCCTGGATCTGGAGGCACTGCGTCTGCGACATCAGATGCAG
CCGCAAGATGCGCTGCACGAGGAGATTATAGCCGACGATGCGACCTCCAG
CCTGGGCACACCGGCCACTCCGGATACGCCGGGCACTACGGCGCCGACGA
CAACGGCCAATACGCCGGATAAGGCCATCAATTTCGCCAACGATGACAGC
GATGACGAGTTCGGGAACGCCAGAAGACCAGTTCATCGAGATCGTTTTCG
GAGCCGGAGACGCGCATCGATTGCTCCTCTGCCCGCCCTGCGCTTGAACA
GCAAGGAGATGTTGGCCAGCGACTTCGATAGCCACAGCCTGGCCTCCAAC
CAGGCCTCCATCACCAGTGTCAACTCCCTGGCCAGTTTATTGCGCGAGAA
GATGCAGGCTTTTCCGCAGCTGATAAGAAAGAAGAAGCGCGAGACGAAGG
ACTACAAAATCAAGATATTCGTCATCATCATGTTTTTCATCATCATATTT
CTGATCGGCTATGCCTATGTGGCCTACCACCAGCAGGTGCTCACGCGTAG
CTACTTCCAGAAGATCAAGTTCCATTCGCCACGACCGCATTTTTTCGCAT
CCTGAGTCACGAGGACAAGAAGGTGATATCGGGTCAATTGGGGCGGGACC
CTGGGCTTCGATACCGGCGCATTTATTTTGCCCTGGGAGGAGCACGACGA
AGTGACGGCAGCGTGTGGCACTAAAAGTGGAACGGAGTTGCCGCGACTGC
ATCTGACCTCCAGGACAGGGCGTCAAGGGGTTACACGCTGCATGCAGCAT
GGACCCGGTCT
FMO11460.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:21:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33080-RA | 3190 | CG33080-RA | 65..1123 | 9..1074 | 4810 | 97.5 | Plus |
| CG33080-RC | 3084 | CG33080-RC | 328..1017 | 378..1074 | 2965 | 96.1 | Plus |
| CG33080-RD | 2762 | CG33080-RD | 167..695 | 539..1074 | 2160 | 95 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:21:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5717346..5717714 | 377..9 | 1845 | 100 | Minus |
| X | 23542271 | X | 5711634..5711804 | 708..538 | 855 | 100 | Minus |
| X | 23542271 | X | 5714652..5714812 | 538..378 | 805 | 100 | Minus |
| X | 23542271 | X | 5710765..5710974 | 1017..803 | 615 | 92.1 | Minus |
| X | 23542271 | X | 5711477..5711575 | 803..705 | 495 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:21:57 has no hits.
FMO11460.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-09 10:06:24 Download gff for
FMO11460.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33080-RA | 58..1123 | 1..1074 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:48:55 Download gff for
FMO11460.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33080-RA | 58..1123 | 1..1074 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:20:00 Download gff for
FMO11460.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33080-RA | 58..1123 | 1..1074 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:20:00 Download gff for
FMO11460.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5717346..5717721 | 1..377 | 99 | | Minus |
| X | 5711635..5711803 | 539..707 | 100 | <- | Minus |
| X | 5714652..5714812 | 378..538 | 100 | <- | Minus |
| X | 5711477..5711572 | 708..803 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:48:55 Download gff for
FMO11460.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5605510..5605605 | 708..803 | 100 | <- | Minus |
| arm_X | 5605668..5605836 | 539..707 | 100 | <- | Minus |
| arm_X | 5608685..5608845 | 378..538 | 100 | <- | Minus |
| arm_X | 5611379..5611754 | 1..377 | 99 | | Minus |
