FMO11461.5prime Sequence
1120 bp (1000 high quality bases) assembled on 2011-12-09
> FMO11461.5prime
CAGTCGACATGGCGCAGCGGCTTCATCTTTCGCTGGTCGGTGTGGTGCTC
CTAAACGCGACCGCCTCCTTCGCCTGGAAGCCCATCGTTGGCGGCGGCAG
CGGGATTAGCGGCGGCACTGCCGCCTACAGCCTCAAGCAATCGCATCCAG
GGGCGGCGAGCAGTAGCCATGAAATATCCACCAGCTTCTCGCAGTTCGGC
GGCGACAAGGAGACCACCGAAGTCGAGGACGAGCTCTTGCTGGGTCGCGC
TGCCATTGTGAACGGCGTCGATTCCAGTGCAGCGGTGTCCCATCCAATCA
GCTTTGCTGACCACTTGGAGGACCAGTACGAGTCGTACAGCATCGAGGAC
GAGGCGCCCAAAGAGCCGCTGGCCTTCCCGCGGTCTCCAGTGTACGGCTC
CGATCGCTGCAGCGTCAAGAAGTTCGCCTTCAATCAGGACGGCGAGGTGG
AGTACGGCAATCCGATGCCGGAACTGGACCAGTTTACTATCTGCTTTTGG
ATGCGATTCACTAACCACAGCGGCGACCACGTCCTCTTGACCTACGAGGC
TGGAAAGGAACCACGCGAGGTGCAAATCTGGGTCGCAAATGCGCAGAATT
CCAGTTTCCTTTCGATGGCCATAAAAGGTCAGCAAATGTACAGATTGAAC
TACCCGTTGAAAATGCGCCAGTGGCATCACATGTGCAGCTCGTGGAATGG
CAAGACGGGCGAGTGGCAGGCCTGGCTGAAGGCAGAACGCATTGGGCGTG
GTTTCCACAACTCGTTGGTGGGACATAAAATCCCAGCGAATGGCAAGCTG
CGCTCCGGCGGCAGTTCGGTCACCGGCGAGGTGAGCCACGGCCTCCACTT
CGAGATGACGCTCGTCCAGGTCTATCGGGTGCGCTCAGTGCAGGCAAGGC
GCATCGCGACCACAAGCACCACCATGTCCACACTTTGATCACGAGGGCCA
GGAGTCTCAGCACCACTCGTGCCCCCCCTCGATTATCGTCTCAACCCATG
CACACTCCTTCTCGCAGTGGCCAGATCCCGACCCGGGTGCCGCATCAACT
TTAGCCAATCCGCCCGCCGACTGCAATTGGTGCCTCCCGCTCTTGCCGGC
CGGAACTCGACCGAATTCGC
FMO11461.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:23:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| b6-RA | 2139 | CG3100-RA | 150..1265 | 5..1114 | 5070 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:23:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1686773..1687317 | 5..549 | 2680 | 99.4 | Plus |
| X | 23542271 | X | 1688901..1689116 | 764..975 | 880 | 98.1 | Plus |
| X | 23542271 | X | 1688647..1688769 | 642..764 | 615 | 100 | Plus |
| X | 23542271 | X | 1688480..1688574 | 549..643 | 475 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:23:32 has no hits.
FMO11461.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-09 10:06:32 Download gff for
FMO11461.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| b6-RA | 144..1256 | 1..1108 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:49:40 Download gff for
FMO11461.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| b6-RA | 146..1258 | 1..1108 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:20:36 Download gff for
FMO11461.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| b6-RA | 146..1258 | 1..1108 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:20:36 Download gff for
FMO11461.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1686769..1687317 | 1..549 | 98 | -> | Plus |
| X | 1688481..1688574 | 550..643 | 100 | -> | Plus |
| X | 1688649..1688769 | 644..764 | 100 | -> | Plus |
| X | 1688902..1689123 | 765..981 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:49:40 Download gff for
FMO11461.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1580802..1581350 | 1..549 | 98 | -> | Plus |
| arm_X | 1582514..1582607 | 550..643 | 100 | -> | Plus |
| arm_X | 1582682..1582802 | 644..764 | 100 | -> | Plus |
| arm_X | 1582935..1583156 | 765..981 | 97 | -> | Plus |
