Clone FMO11462 Report

Search the DGRC for FMO11462

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:114
Well:62
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG16940-RC
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11462.5prime Sequence

1135 bp (1047 high quality bases) assembled on 2011-12-09

> FMO11462.5prime
CAGTCGACATGCCTTACCCTTTATATCCCGCCCATAGCCAAGTAATGTCG
GAAACGTCAAGCGTCAACGTGGATGCGGACCGAGATTGCAGAAGGATTGA
GGGCCTCCGACAGCGCTCACAACGCCTTGCTGCCCGCCTCCAGCAGATGC
AGAGGGAAATGGAGTCTAATGCATCCAGCAAAGACCTATCGGCCAACAAT
GCCGTTATTCCGCTGCAGCCACTAATGCGCTGGGCGGAACCACGGCCACA
TCCCAACCAATCCCAACCATCTGCTCGGAGCAACAGCAGGCAGGCCATTC
CTTACGGTGTGCCAGTATCCACGCCAGCGCCGGTAGCTATGCAATTGCCC
TACCACGTAGCATTCGCCTCCTACCAGGCGACCATGCAGATTCCCTGCCT
TCAGCCACTTTCGCATTTGCACGTCGTGTCTAGTCCCAGCCATCGGTTAA
TAGCGAAAAAGAAGTCGAAGCGGGCTCTTCGAAATGAGGTGGAAGCTCTT
CAGGATATGGTCAAACATCTTTCACACCTCTCCCCAGATGTTAACGCGTA
TGCCTGCCAGCTGATACGTAAAAACGAGATCCTTTCTCAGCTCGAGTGGA
GTCAGACCAGGTCAGAAGCACATCCGCAACAGGTTGGTTACCAGGGGCGG
CATCGCCACGATTCTGAGGTCTCTGCTACAAACAATGGAAGTCATGTACA
GCAGCAACCGAAACTAGGACGAAGGCAACGCAATAGCAAGAAAAACGATG
GATCCGGTAGCAATGGGACCCAATCGCAAAAAACCGAACTAGAGGCCATG
CGGTCGTACATAAACAAGATTGTCCAACGTCACGTGGGTATGGATCACCA
GTTGTCGGAAGACTTGATTTTCAAAGGTAAACTTCTCCGACCTGGAAGCG
CATGCGCAGAGAACTAGTTGCGGCGGGTTATGGGCGCATTGTAGAGAGGA
AATCCGGGTTAACCCGCAAGAACAACAGACAGGCCTTTATAATCATGTCC
ACTGATCGAGAAGCACTTCGAACGAGAATGGCATCGTGCTCTTGCCAGGT
GGCTTAGCGCCTTATGCTCGAATGGGTGACAAAGTACGTGCAATTCTTGC
TAACCTGATGCTCAGGTTAGTTTCAAAGACGCCTG

FMO11462.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:23:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG16940-RC 3546 CG16940-RC 42..1156 9..1130 5165 98 Plus
CG16940-RA 3605 CG16940-RA 136..1215 44..1130 4990 98 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:23:39
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 212844..213844 44..1048 4730 99.4 Plus
Blast to na_te.dros performed on 2014-11-27 20:23:40 has no hits.

FMO11462.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-09 10:06:33 Download gff for FMO11462.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16940-RC 42..1143 9..1116 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:49:45 Download gff for FMO11462.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16940-RC 42..1143 9..1116 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:20:40 Download gff for FMO11462.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16940-RC 42..1143 9..1116 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:20:40 Download gff for FMO11462.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 212750..212784 9..43 100 -> Plus
3L 212844..213898 44..1104 98 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:49:45 Download gff for FMO11462.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 212750..212784 9..43 100 -> Plus
arm_3L 212844..213898 44..1104 98 <- Plus