FMO11466.5prime Sequence
1141 bp (1013 high quality bases) assembled on 2011-12-09
> FMO11466.5prime
CAGTCGACATGTTGAATGGACAGATTGCACACAGTTATTTGGAGAACTCG
TGCACGCTGATCATACCCCGCCCGCCTGTCCTGAATCAGTCCTCAAAGTC
GGCCCAGCCAGCAGCAGCAGCTGCTGCTTCTTCTTCCGCTGGTGAGGAGT
TTGGTCAGGAAGCGGGGTCGGGGTTGGCGGAAGCGGAGGCGTTGCATGTG
GATCGCATAAGAAACTGCGATATATTCGTTGACGCGCACGATCTTTATTT
CTACGCAGATGTTAAGCTGTACAAATTCCACAGCCGTCGCACCTTCGACT
TGCGAGAGCTGAAGACGCTGTTGATAAAGTTCAACACGACAGAGAATCAC
TACCAAATTTGCCTGCGCTGTCTGCCCCTAACAGCGGGTGCCCAGGAAGG
ACCCGGTGGAGAAAGAGGCGGAGGCGGTGGTACGGGGGATGCAGCCAAGC
AGTGGAATAGTCGCAAAGAGTACATAGCCGCATTCCTGCACCTACCCACA
CTGAGTGCCAATTTGCCGGACAAGCAGCCTCTGGTGCAGGAATGGAAACT
CAAACGAATCACCGATCAGTGCCAATTGCAGCTCGACGACCACGAGCGCA
CCTACAAGCTGACCAACAATTTTGGGTACGGCTATGCTAGCGAATACAGC
GGACCGCTAGACCTGAGTGAGTTGGACAGAGCCACGTGCCGCGTGTCGGA
GCCACATCGCATGAGCCCCATCCAAAGGCGGCAAGAGCGCGTGGTCGATG
AGATGAAGCGCTTTTCCCGCGAGCAGTACAAAATAAATTTTGTGGAGCTA
CAGGTTCCGTCCGGTCACCAGAATCCTTTACGCTACAAACCGAAAATCTA
CGAGACTTCCATGACCCAGGAACAAGCGCATCTGCTGCACAACATCAGCC
GAATGCAGACACGGGGAGCAGCAGCCGTGCGACGTTTTTCGGCAAAACGA
GGATCGATTGCGGGCTGATAAGCATTCTGTGGGCCAATATGCTATGGATG
GTGGCGGACGACGACAATGAGCCGACGGTGGTGAATCGGGCTGGACGCGA
AGCATACTGGTGCCGCTTTATTGCTACTTTGGCCACTCGAACAACTATCG
GGAACGAACAGGGTGGTGCCTCCCGCGGCGGGGATGTGATA
FMO11466.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:24:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10055-RA | 2422 | CG10055-RA | 103..1190 | 9..1103 | 5090 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:24:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 7185814..7186214 | 671..271 | 1990 | 99.8 | Minus |
3R | 32079331 | 3R | 7185333..7185759 | 1103..670 | 1605 | 94 | Minus |
3R | 32079331 | 3R | 7186306..7186571 | 274..9 | 1315 | 99.6 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:24:11 has no hits.
FMO11466.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-09 10:06:35 Download gff for
FMO11466.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10055-RA | 78..1181 | 3..1115 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:49:58 Download gff for
FMO11466.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10055-RA | 98..1201 | 3..1115 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:20:51 Download gff for
FMO11466.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10055-RA | 98..1201 | 3..1115 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:20:51 Download gff for
FMO11466.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 7185322..7185757 | 672..1115 | 95 | <- | Minus |
3R | 7185814..7186210 | 275..671 | 100 | <- | Minus |
3R | 7186306..7186576 | 3..274 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:49:58 Download gff for
FMO11466.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 3011044..3011479 | 672..1115 | 95 | <- | Minus |
arm_3R | 3011536..3011932 | 275..671 | 100 | <- | Minus |
arm_3R | 3012028..3012298 | 3..274 | 98 | | Minus |