Clone FMO11466 Report

Search the DGRC for FMO11466

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:114
Well:66
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG10055-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11466.5prime Sequence

1141 bp (1013 high quality bases) assembled on 2011-12-09

> FMO11466.5prime
CAGTCGACATGTTGAATGGACAGATTGCACACAGTTATTTGGAGAACTCG
TGCACGCTGATCATACCCCGCCCGCCTGTCCTGAATCAGTCCTCAAAGTC
GGCCCAGCCAGCAGCAGCAGCTGCTGCTTCTTCTTCCGCTGGTGAGGAGT
TTGGTCAGGAAGCGGGGTCGGGGTTGGCGGAAGCGGAGGCGTTGCATGTG
GATCGCATAAGAAACTGCGATATATTCGTTGACGCGCACGATCTTTATTT
CTACGCAGATGTTAAGCTGTACAAATTCCACAGCCGTCGCACCTTCGACT
TGCGAGAGCTGAAGACGCTGTTGATAAAGTTCAACACGACAGAGAATCAC
TACCAAATTTGCCTGCGCTGTCTGCCCCTAACAGCGGGTGCCCAGGAAGG
ACCCGGTGGAGAAAGAGGCGGAGGCGGTGGTACGGGGGATGCAGCCAAGC
AGTGGAATAGTCGCAAAGAGTACATAGCCGCATTCCTGCACCTACCCACA
CTGAGTGCCAATTTGCCGGACAAGCAGCCTCTGGTGCAGGAATGGAAACT
CAAACGAATCACCGATCAGTGCCAATTGCAGCTCGACGACCACGAGCGCA
CCTACAAGCTGACCAACAATTTTGGGTACGGCTATGCTAGCGAATACAGC
GGACCGCTAGACCTGAGTGAGTTGGACAGAGCCACGTGCCGCGTGTCGGA
GCCACATCGCATGAGCCCCATCCAAAGGCGGCAAGAGCGCGTGGTCGATG
AGATGAAGCGCTTTTCCCGCGAGCAGTACAAAATAAATTTTGTGGAGCTA
CAGGTTCCGTCCGGTCACCAGAATCCTTTACGCTACAAACCGAAAATCTA
CGAGACTTCCATGACCCAGGAACAAGCGCATCTGCTGCACAACATCAGCC
GAATGCAGACACGGGGAGCAGCAGCCGTGCGACGTTTTTCGGCAAAACGA
GGATCGATTGCGGGCTGATAAGCATTCTGTGGGCCAATATGCTATGGATG
GTGGCGGACGACGACAATGAGCCGACGGTGGTGAATCGGGCTGGACGCGA
AGCATACTGGTGCCGCTTTATTGCTACTTTGGCCACTCGAACAACTATCG
GGAACGAACAGGGTGGTGCCTCCCGCGGCGGGGATGTGATA

FMO11466.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:24:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG10055-RA 2422 CG10055-RA 103..1190 9..1103 5090 98.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:24:10
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7185814..7186214 671..271 1990 99.8 Minus
3R 32079331 3R 7185333..7185759 1103..670 1605 94 Minus
3R 32079331 3R 7186306..7186571 274..9 1315 99.6 Minus
Blast to na_te.dros performed on 2014-11-27 20:24:11 has no hits.

FMO11466.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-09 10:06:35 Download gff for FMO11466.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10055-RA 78..1181 3..1115 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:49:58 Download gff for FMO11466.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10055-RA 98..1201 3..1115 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:20:51 Download gff for FMO11466.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10055-RA 98..1201 3..1115 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:20:51 Download gff for FMO11466.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 7185322..7185757 672..1115 95 <- Minus
3R 7185814..7186210 275..671 100 <- Minus
3R 7186306..7186576 3..274 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:49:58 Download gff for FMO11466.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3011044..3011479 672..1115 95 <- Minus
arm_3R 3011536..3011932 275..671 100 <- Minus
arm_3R 3012028..3012298 3..274 98   Minus