FMO11467.5prime Sequence
1144 bp (1033 high quality bases) assembled on 2011-12-09
> FMO11467.5prime
CAGTCGACATGGATCGCAAAGAAACTGTTTCGAAGGACCAAGCGGTACGT
CGAATTGCCCATAATGACTTTATATTAGTCTCACGTCAATTGCTGATCAA
TCGAGCCGACACGGATCCGGACAAAGGAAGTGCCAGGATGTTGATTATCT
ACAGCAGTGGAAAGCAGCACATCGTCACCTTCAAGCTGCCCAATCTTGCG
TGTAGAGTGCAGGATCTGTTTTTCCAAATGGATCTTCAGATCGATGAGAG
CACCACGATTGATTGCATTGAGAATGCCGGCGGTATTATCCATTTGGTTG
TCTCTGTGGGCTTCCCCATCAGTGATAACATTGCCGAGACGGTTGCCCAT
GCGGAGGAGTTCTATAGGAAGGTGCATCAGTCAAAGGCATCATCGGCTGA
TGCCGCTCCACCCAATGCGATGGCCGGTGAAGAGCACTCCCCTGCGGTTG
TCAAACCATCAGAGACTGCGGTGGCCAACAATGGTTGCCAGCCAGCTGCA
AGTGCAACCAAAGGCAAGAAGCACAAGAAAAGTCCTTGCGGGAGTCCGGG
AGAAAACAATGATGGCCAAGTGATATTGTCGGCGGATCAAGACGCCAATA
CTAATACCAAGGCCAAGAAACAGAAGAAGTGCCATATTGCAAAGGATAAC
AATGGAATTCAAGCTGCTAGTTCTCATGACAACCCTAGTTCATCTGGCAA
TAAACAGGGAAGTCACAACTCCACGGCTATAACCTCCAATTCTACAATGA
CGAGTAATGGTCTTCGGGGCGTGCAACCAGCTGAAGATGCTCCCGCAATC
TCCCAGTGGATCAGTCGAGGAACAATGCCGCTGTTAGCAAGAAATCGGAA
GAGACAGCTGGTGGATCTCAATCGCGGGTGCAATCGAATGTTGCATCCAT
ATCCTCGCCAGCGGTGAAGCAACTAGCGACGCTGCTATACCCACACCAGC
AGAACGCGCAGAGCGTAGTCGCCTGCGCGAATCGCAATTGATACTAGCAG
GACGTGATGAGATGCCGTGGTGCTGTGAGCAGCGTGATGAGGAAACCACC
GCCGCCGATGATGTCAACGAGGAAGACTTCACCGATGAAAATCAGCCGTT
CAATATCCGGCAACTGGTACCGTGCCTGAACATACTATCAGACT
FMO11467.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:24:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12717-RB | 2970 | CG12717-RB | 269..1403 | 9..1122 | 5035 | 97.4 | Plus |
| CG12717-RA | 2734 | CG12717-RA | 269..1403 | 9..1122 | 5035 | 97.4 | Plus |
| CG41423-RA | 873 | CG41423-RA | 161..282 | 691..812 | 490 | 93.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:24:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 12762278..12763343 | 1063..9 | 4740 | 98.5 | Minus |
| Y | 3667352 | Y | 3094027..3094576 | 978..428 | 1630 | 88.1 | Minus |
| Y | 3667352 | Y | 3203122..3203671 | 428..978 | 1630 | 88.1 | Plus |
| Y | 3667352 | Y | 3250381..3250813 | 978..557 | 1415 | 90.1 | Minus |
| Ymm | 880023 | Ymm | 775385..775817 | 557..978 | 1400 | 89.8 | Plus |
| Y | 3667352 | Y | 3084782..3085213 | 557..978 | 1365 | 89.8 | Plus |
| Y | 3667352 | Y | 3212941..3213372 | 978..557 | 1365 | 89.8 | Minus |
| Y | 3667352 | Y | 3228672..3229178 | 427..910 | 1345 | 86.5 | Plus |
| Y | 3667352 | Y | 3061605..3062111 | 910..427 | 1330 | 86.3 | Minus |
| Y | 3667352 | Y | 3258611..3259040 | 557..978 | 1245 | 88 | Plus |
| Y | 3667352 | Y | 3242284..3242647 | 910..557 | 1180 | 89.6 | Minus |
| Y | 3667352 | Y | 3165609..3165969 | 910..557 | 1130 | 89.3 | Minus |
| Y | 3667352 | Y | 3137009..3137369 | 557..910 | 1130 | 89.3 | Plus |
| Y | 3667352 | Y | 3185928..3186288 | 910..557 | 1130 | 89.3 | Minus |
| Y | 3667352 | Y | 3113162..3113477 | 674..978 | 890 | 87.7 | Plus |
| Y | 3667352 | Y | 3084616..3084785 | 427..599 | 545 | 89 | Plus |
| Y | 3667352 | Y | 3213369..3213538 | 599..427 | 530 | 88.4 | Minus |
| Y | 3667352 | Y | 3250810..3250979 | 599..427 | 530 | 88.4 | Minus |
| Y | 3667352 | Y | 3236842..3236963 | 812..691 | 505 | 94.3 | Minus |
| Y | 3667352 | Y | 3265594..3265715 | 691..812 | 490 | 93.4 | Plus |
| Y | 3667352 | Y | 3258446..3258614 | 427..599 | 480 | 87.9 | Plus |
| Y | 3667352 | Y | 3113042..3113146 | 427..531 | 360 | 89.5 | Plus |
| Y | 3667352 | Y | 3136914..3137012 | 498..599 | 295 | 88.2 | Plus |
| Y | 3667352 | Y | 3165966..3166064 | 599..498 | 295 | 88.2 | Minus |
| Y | 3667352 | Y | 3186285..3186383 | 599..498 | 295 | 88.2 | Minus |
| Y | 3667352 | Y | 3265511..3265576 | 472..538 | 270 | 97 | Plus |
| Y | 3667352 | Y | 3236992..3237046 | 526..472 | 260 | 98.2 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:24:19 has no hits.
FMO11467.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-09 10:06:36 Download gff for
FMO11467.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12717-RA | 263..1418 | 9..1140 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:50:01 Download gff for
FMO11467.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12717-RA | 269..1424 | 9..1140 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:20:55 Download gff for
FMO11467.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12717-RA | 269..1424 | 9..1140 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:20:55 Download gff for
FMO11467.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 12762188..12763343 | 9..1140 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:50:01 Download gff for
FMO11467.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 12656221..12657376 | 9..1140 | 96 | | Minus |
