FMO11468.5prime Sequence
1105 bp (971 high quality bases) assembled on 2011-12-09
> FMO11468.5prime
CAGTCGACATGACCGAGAAGGATACCGTCTCGATGGCTACCGTGCAAATG
AAGCCCGACTATGCGGCTAGCGAGGTCTACAGCACCGCCAGCAAACCGCC
ACCGATGGGATTTTTTAACTTTAATCATCAGGCCTACAAGCGCCAGGCGA
ATTCGGTGAAAATCGCCAAGATCACCGCCTTCACCATCATCGTGTCAGCC
TTCATCCTGGGATCCTTCATCCTGGCCTCCTCCTACCTGCAGGCCAAGGC
CTCGTGCGATCAGGTCCAGGCCCTCGACTCGGTGCTGGAAAAGGAGCTAA
TGCTTGAGACTTTGCAGCAGGTGGGCAAGGAACTTCCCCGTGCTGAACCC
CTGCTGGGAGGAGCTGCTGGAGCTGCCGATGACTCCGAACTGCAGAGCTT
GGAGCCGGAAAGTCGTAAGACTGAAGCCACCCAGGATGCCGAGGAGCACC
CCGACAAGGACAACTCCTACTCCGACAGCGATGAGACCGATGAGCTGCAG
AAGTTCCCCGGCAAGATGCCACTCGAGCTGGACTTGAGTGACCTGGCTGC
CGCCATTCTGCGCAACAACAAGAAATCCCGCATGAACTGTGTGGTGGAGC
GCAAGCACGCCGAGGAGATTGTCGACTCGCCCTCGAAGACGGTAGCCCTG
CCCTTCGGAGTCAACCTGACCACGGATCCCAAGAAGGCACGCATCACCGG
CGAGCGGATCTCGATCTTCTGCGACGGCGGCGACGACAAGGATAAGGAGG
AGAAGGAGGCCAAGCGCCAGCGGGAGCAGGAGGAGGAGGACTCCGATGAG
GATGCCGAGCCGCTGAGGCCCATGTTCATTCCCTTCCAGCGAGTGCCCAT
TCCCTTCGGACGCATTCCCGACCAGATGCGCTGACCCATATGCCCAGAGG
ATGATGCCACCAGCCATGCAGATGCAACAGCAATTGCCCAGCAGCAACAG
CAGGACCCATCATCATCGCAGCTGCACTTCGGTTCAGCACTGCCATGCGT
CTCCATGCGCCACAGGGTGATGCAGGCGCTCGCATGAGTCTTCGGGAATG
CAAATTCCAAGTCAGACGTGTGCCATTCCATGTCACGATCCTTCGGTGAA
TCATG
FMO11468.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:24:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Msr-110-RA | 2722 | CG10596-RA | 207..1247 | 9..1036 | 4790 | 98.3 | Plus |
| Msr-110-RC | 2600 | CG10596-RC | 175..1125 | 99..1036 | 4340 | 98.1 | Plus |
| Msr-110-RB | 2695 | CG10596-RB | 302..1220 | 131..1036 | 4195 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:24:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 5568600..5568996 | 967..575 | 1785 | 99 | Minus |
| 3L | 28110227 | 3L | 5569117..5569363 | 574..328 | 1235 | 100 | Minus |
| 3L | 28110227 | 3L | 5573631..5573831 | 330..130 | 1005 | 100 | Minus |
| 3L | 28110227 | 3L | 5576838..5576933 | 104..9 | 465 | 99 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:24:27 has no hits.
FMO11468.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-09 10:06:36 Download gff for
FMO11468.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Msr-110-RA | 207..1262 | 9..1048 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:50:05 Download gff for
FMO11468.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Msr-110-RA | 207..1262 | 9..1048 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:20:59 Download gff for
FMO11468.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Msr-110-RA | 207..1262 | 9..1048 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:20:59 Download gff for
FMO11468.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 5568507..5568996 | 575..1048 | 95 | <- | Minus |
| 3L | 5569117..5569361 | 330..574 | 100 | <- | Minus |
| 3L | 5573632..5573829 | 132..329 | 100 | <- | Minus |
| 3L | 5574940..5574966 | 105..131 | 100 | <- | Minus |
| 3L | 5576838..5576933 | 9..104 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:50:05 Download gff for
FMO11468.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 5561607..5562096 | 575..1048 | 95 | <- | Minus |
| arm_3L | 5562217..5562461 | 330..574 | 100 | <- | Minus |
| arm_3L | 5566732..5566929 | 132..329 | 100 | <- | Minus |
| arm_3L | 5568040..5568066 | 105..131 | 100 | <- | Minus |
| arm_3L | 5569938..5570033 | 9..104 | 98 | | Minus |
