FMO11469.5prime Sequence
1119 bp (1020 high quality bases) assembled on 2011-12-09
> FMO11469.5prime
CAGTCGACATGCTTCCGTCGGACGTGTGCCGCACCTGTGCGGTGCAGAAC
AGCCAATTGCTGCCCTTGTCCACTTGCCTGGACAAAGACTCCTCCAAAAG
CTACTATGCGGTGCTCCAGGAATTGACGCAAATCGATCTGGAAAACACCG
ATGACAACCTGCCGCAACATATATGCAGCGAGTGCTGGAGACGAATGGAA
AGTGCCTATACCTTTGTGCAACAGGCCAGAAAAGTCCATGGAGAGCTGCT
GGCTCAGTTGAGGGAATGTCTAGACGAATTGCCCATCGATATTCCTGCGG
AACAGAACATAAAAACGGAAGTAGACCTCGATGATGGCGGTAACAAGTCC
GAAGTGGAAGTGGACGACACCGAAGCGACGGCTTTGGAACTTAAGTGGCA
GCCGGCGAGTGGCAGCGATCGGGAATTTTGTTCTGGTCCGGAAAGCGATG
AAGATCAAGTGGAAAAGAAGTCGTATCATCTACGTCGAAGCTCTCGAAAA
GTAAAGCATCCAGTGGAAAGCGAAAACGAGGAATGTAAGCCATCTGAACC
ATCGCCGGTTAAGCGCCGTCGAGGACGCCCACCTGGTCCAGCGAAAAGCC
AGGCGATGACCACGGATGGCCGGCACGCATGTGAGGTTTGCGGAAAGACA
TTCTCCTGGTACCGCGACATGCAGCGCCACGCCAGGATCCACTTCGAGAA
CGCTTCATACGTGTGCGACACCTGTGGCAAGGGATTCCTGCGCAAGGACA
AGTACATATTTCATCTCCGATGCCACAAGAAGCGAGAGGCCAAATGGAAA
GGCTCTCCAGCTCGGGAAAGAGTGGCGTTTTGCTGAGCGCCTCTATAGCT
CAGGAAAGTTAAAAAGAATCGAGTGCAAGCTATGCGGGTTGAGCTGCCAG
CGAATGGAGGAGCTTAGAGCTCACTATGGGATCACGCAGATACGGAGACC
TTAGTCACTTGAGACGGAATAGTGACGTGGTTAGAAGAGCATTTTTCCTG
GCTTGCCATTGTGACTTGGACAATATAAGATCAGATTCTGCGTTGACATA
GCCGATGGCCAATTTGGAGAAGTTTGCCCTGGGTGTTATGTGAAATTCAC
GGATACGAGCCTGGGGACT
FMO11469.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:24:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11902-RB | 4601 | CG11902-RB | 144..1239 | 9..1110 | 5025 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:24:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25336103..25336646 | 533..1078 | 2165 | 96.7 | Plus |
| 3R | 32079331 | 3R | 25335603..25335916 | 138..451 | 1570 | 100 | Plus |
| 3R | 32079331 | 3R | 25335400..25335528 | 9..137 | 645 | 100 | Plus |
| 3R | 32079331 | 3R | 25335971..25336051 | 452..532 | 405 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:24:36 has no hits.
FMO11469.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-09 10:06:37 Download gff for
FMO11469.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11902-RB | 90..1192 | 9..1119 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:50:08 Download gff for
FMO11469.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11902-RB | 144..1246 | 9..1119 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:21:03 Download gff for
FMO11469.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11902-RB | 144..1246 | 9..1119 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:21:03 Download gff for
FMO11469.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25335400..25335528 | 9..137 | 100 | -> | Plus |
| 3R | 25335603..25335916 | 138..451 | 100 | -> | Plus |
| 3R | 25335971..25336051 | 452..532 | 100 | -> | Plus |
| 3R | 25336103..25336681 | 533..1119 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:50:08 Download gff for
FMO11469.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21161122..21161250 | 9..137 | 100 | -> | Plus |
| arm_3R | 21161325..21161638 | 138..451 | 100 | -> | Plus |
| arm_3R | 21161693..21161773 | 452..532 | 100 | -> | Plus |
| arm_3R | 21161825..21162403 | 533..1119 | 95 | | Plus |
