FMO11471.5prime Sequence
1128 bp (1042 high quality bases) assembled on 2011-12-09
> FMO11471.5prime
CAGTCGACATGGTGGAAAATATATCACTGAATGTTACTGTAAAGTCGTCG
GCTCGGAAAAATCAACAGCAGTCGCCCGCGCTTTCGGTTAAAAAACGTGC
ACAGAAATCCCAGGATTTCGACTTTCAATTCAATGTGGACAAGCCCAAAG
TCAAGGCAATCGTTGTGCGAAGAAGGGCGCCTCCTTCGAAAGTTGAACCT
ACAAATTCATCAGTTCCCAATACCACGAAATCGCCGACGCCTTCAGTTTC
CTCCAGCAAATCCGCAATTTCCACTCTTTCAGCATCCCCCAAAGCAAATG
CATCCAACGATGATCTTATGTTCAATGTTAGCCCAACGAAACCACCTGTT
AAGAGCGTTTTAGGCGACGATTTCATGCTAAATGTGACCACAAAGCCGGT
GGTTGCCCAGAAAGCCAAGCCAAAAATCACACGAGCCGAAAGATTGGGCA
AGAAACAGAGGCAGGGCAAGCCACTGACGAAGCTCAGCGAAGAGCAGATC
ACGCGGGCGCTGAAGAGCAACAAAAAGCCAAAAAATCCAAATCAATTACC
CACGCCCGGTGACCTTTTCCGCGCTCAACTGGAGGAGGAGAGGCGGCAAA
AGCGTCGTGAAGAGGGAGGAGGGGATCAGGAAGCCAGCGCCGATGAGGAG
GATGCGAAGAACAACTCAGGAGGGGGATCTCCGAGGGTAAAACCGAGTTC
AGCCGTTAAGGAGTCCAAAAAGTCATCAGATATTGAGGATTCCGGCGAAT
CCGGCGAAGAATCTGCAACATCCGATGAGGAACCAGATGAATCCAGTGCA
CAATCTCCTGGACAAGAAAAGGAACCCAAACAAACCGCGAAGAAACCACC
GAAAGCCGAGGAACCTCGTCCACAACCGTTTTCGCACCAAGAAGATCGGC
CTCTTCGACCAAAGCGACGTGAGGCACTCAGCAACTGGGCCCAAGAGCGG
TGAGCCCGTCAGGAGACCATCTTTACAGCTCTAAAATTTCACGTTGGGAC
TGCATCTCATGCTGTAAAGAACTTGAGATCTGCTTAGCATCGAGGAGCTA
CTAGCGTGCAGCAGAAGACATTCCGAAGGTCTCAGGCCAGGAATGGCCGG
TACGTTCGCGAACGGGCCTCGAGACCCT
FMO11471.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:23:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8611-RC | 3917 | CG8611-RC | 104..1228 | 9..1117 | 5030 | 97.5 | Plus |
CG8611-RB | 4145 | CG8611-RB | 104..1228 | 9..1117 | 5030 | 97.5 | Plus |
CG8611-RA | 3614 | CG8611-RA | 104..1225 | 9..1117 | 4975 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:23:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 17420911..17421926 | 1069..66 | 4410 | 98.1 | Minus |
X | 23542271 | X | 17421983..17422042 | 68..9 | 300 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:23:16 has no hits.
FMO11471.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-09 10:06:31 Download gff for
FMO11471.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8611-RB | 114..1209 | 9..1089 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:49:32 Download gff for
FMO11471.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8611-RB | 104..1199 | 9..1089 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:20:29 Download gff for
FMO11471.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8611-RB | 104..1199 | 9..1089 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:20:29 Download gff for
FMO11471.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 17420888..17421923 | 69..1089 | 97 | <- | Minus |
X | 17421983..17422042 | 9..68 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:49:32 Download gff for
FMO11471.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 17314921..17315956 | 69..1089 | 97 | <- | Minus |
arm_X | 17316016..17316075 | 9..68 | 100 | | Minus |