Clone FMO11471 Report

Search the DGRC for FMO11471

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:114
Well:71
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG8611-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11471.5prime Sequence

1128 bp (1042 high quality bases) assembled on 2011-12-09

> FMO11471.5prime
CAGTCGACATGGTGGAAAATATATCACTGAATGTTACTGTAAAGTCGTCG
GCTCGGAAAAATCAACAGCAGTCGCCCGCGCTTTCGGTTAAAAAACGTGC
ACAGAAATCCCAGGATTTCGACTTTCAATTCAATGTGGACAAGCCCAAAG
TCAAGGCAATCGTTGTGCGAAGAAGGGCGCCTCCTTCGAAAGTTGAACCT
ACAAATTCATCAGTTCCCAATACCACGAAATCGCCGACGCCTTCAGTTTC
CTCCAGCAAATCCGCAATTTCCACTCTTTCAGCATCCCCCAAAGCAAATG
CATCCAACGATGATCTTATGTTCAATGTTAGCCCAACGAAACCACCTGTT
AAGAGCGTTTTAGGCGACGATTTCATGCTAAATGTGACCACAAAGCCGGT
GGTTGCCCAGAAAGCCAAGCCAAAAATCACACGAGCCGAAAGATTGGGCA
AGAAACAGAGGCAGGGCAAGCCACTGACGAAGCTCAGCGAAGAGCAGATC
ACGCGGGCGCTGAAGAGCAACAAAAAGCCAAAAAATCCAAATCAATTACC
CACGCCCGGTGACCTTTTCCGCGCTCAACTGGAGGAGGAGAGGCGGCAAA
AGCGTCGTGAAGAGGGAGGAGGGGATCAGGAAGCCAGCGCCGATGAGGAG
GATGCGAAGAACAACTCAGGAGGGGGATCTCCGAGGGTAAAACCGAGTTC
AGCCGTTAAGGAGTCCAAAAAGTCATCAGATATTGAGGATTCCGGCGAAT
CCGGCGAAGAATCTGCAACATCCGATGAGGAACCAGATGAATCCAGTGCA
CAATCTCCTGGACAAGAAAAGGAACCCAAACAAACCGCGAAGAAACCACC
GAAAGCCGAGGAACCTCGTCCACAACCGTTTTCGCACCAAGAAGATCGGC
CTCTTCGACCAAAGCGACGTGAGGCACTCAGCAACTGGGCCCAAGAGCGG
TGAGCCCGTCAGGAGACCATCTTTACAGCTCTAAAATTTCACGTTGGGAC
TGCATCTCATGCTGTAAAGAACTTGAGATCTGCTTAGCATCGAGGAGCTA
CTAGCGTGCAGCAGAAGACATTCCGAAGGTCTCAGGCCAGGAATGGCCGG
TACGTTCGCGAACGGGCCTCGAGACCCT

FMO11471.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:23:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG8611-RC 3917 CG8611-RC 104..1228 9..1117 5030 97.5 Plus
CG8611-RB 4145 CG8611-RB 104..1228 9..1117 5030 97.5 Plus
CG8611-RA 3614 CG8611-RA 104..1225 9..1117 4975 97.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:23:15
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17420911..17421926 1069..66 4410 98.1 Minus
X 23542271 X 17421983..17422042 68..9 300 100 Minus
Blast to na_te.dros performed on 2014-11-27 20:23:16 has no hits.

FMO11471.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-09 10:06:31 Download gff for FMO11471.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8611-RB 114..1209 9..1089 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:49:32 Download gff for FMO11471.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8611-RB 104..1199 9..1089 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:20:29 Download gff for FMO11471.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8611-RB 104..1199 9..1089 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:20:29 Download gff for FMO11471.5prime
Subject Subject Range Query Range Percent Splice Strand
X 17420888..17421923 69..1089 97 <- Minus
X 17421983..17422042 9..68 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:49:32 Download gff for FMO11471.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 17314921..17315956 69..1089 97 <- Minus
arm_X 17316016..17316075 9..68 100   Minus