FMO11472.5prime Sequence
463 bp (397 high quality bases) assembled on 2011-12-09
> FMO11472.5prime
CAGTCGACATGTGGTTTTTATGGCTGATCTGCTTGCTGCTGCCAATCATT
GATGCAGCTGAGGTTGAAAAATCTCCTGCAAAGCCCAACATTATATTTAT
TTTGGCGGATGATTTGGGCTTCAACGATGTGGGATTCCATGGCTCGGCAG
AGATTCCCACGCCTAACATTGATGCCTTGGCCTATTCTGGCATTATTCTG
AATCGTTACTATGTGGCACCCATTTGTACTCCATCCAGATCTGCCCTTAT
GACGGGAAAATATCCCATACACACAGGAATGCAACATACAGTTCTCTATG
CCGCTGAACCACGAGGTTTGCCCTTGGAGGAGAAAATACTACCTCAATAA
TTTGAATGAGTTGGGCTACACCTCTCACATAGCTGGCAAGTGGCATTTAG
GCATTGGAAGCTGAAGTCCCTCCGTTGTATCCCGGCTTCCGTACCACGTG
GGAATTCTGGTCG
FMO11472.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:23:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8646-RB | 1763 | CG8646-RB | 53..508 | 9..463 | 2120 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:23:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12657458..12657619 | 116..277 | 810 | 100 | Plus |
| 2R | 25286936 | 2R | 12657284..12657392 | 9..117 | 545 | 100 | Plus |
| 2R | 25286936 | 2R | 12657673..12657762 | 275..365 | 405 | 98.9 | Plus |
| 2R | 25286936 | 2R | 12657815..12657906 | 365..453 | 265 | 93.5 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:23:24 has no hits.
FMO11472.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-09 10:06:31 Download gff for
FMO11472.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8646-RB | 41..506 | 1..463 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:49:36 Download gff for
FMO11472.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8646-RB | 43..508 | 1..463 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:20:33 Download gff for
FMO11472.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8646-RB | 43..508 | 1..463 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:20:33 Download gff for
FMO11472.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12657274..12657391 | 1..116 | 96 | -> | Plus |
| 2R | 12657459..12657618 | 117..276 | 100 | -> | Plus |
| 2R | 12657675..12657762 | 277..365 | 98 | -> | Plus |
| 2R | 12657816..12657915 | 366..463 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:49:36 Download gff for
FMO11472.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8544779..8544896 | 1..116 | 96 | -> | Plus |
| arm_2R | 8544964..8545123 | 117..276 | 100 | -> | Plus |
| arm_2R | 8545180..8545267 | 277..365 | 98 | -> | Plus |
| arm_2R | 8545321..8545420 | 366..463 | 93 | | Plus |
