FMO11473.5prime Sequence
1099 bp (995 high quality bases) assembled on 2011-12-09
> FMO11473.5prime
CAGTCGACATGACGATGAAATTGTTCTGCATTTGGATTGCTAGTCACGTT
CTCAGTGTTCTGGTTTTAGCGGCCCCCACAAGCGAGGATGTACTCAACCA
GGACACGCCTTACATGAAGGAACTAATGCGTCAAGCCAAAGCTGCTGAGA
TCGAGAGCTTTATGAACCAGAAGGTGGATCCGTGCAAGGATTTCTACGCA
TTCTCCTGTGGCAACTATAAACGCATCAACTCGGCTTTGAACATGCGGGT
ATTGACTACTGGAGTGTTCGAGACTTTGACAAAAGGGCTCAACCGAAAGA
TCCTGAAGATGCTCAACACACCCCATGATAGCCACGACACTCCGGAGGAC
ATTCAGGTGAAGCACTTCTACGAGTCCTGTCTCCAGATCAAGGAGCTCAA
CTCGACGTACAGCGAAAAGCTGAAGCGGCTCATTGCAGAATTTGGAACGA
TGCCGCTGCTGGAAGGATCCTCCTGGCAGGAGGACGACTTTGACTGGCTG
AATACTACTGCTCGCATGGCCCACCGATACGGAATAATGTCCATTATAGG
CGTTGGAGTCGCCACGGACTTCGCCAATAACCAAAAAAACATTATTTACA
TAAACCAGCAGGAGTTCCCATTAAAGACACGTTCCATGTATATGGATAAC
GAAACGGCCATCTACCGCCAAAATTATCAGAATAATATCCAGCTCATTTT
GGAGAAATACTTAGGTGTTAAGGACGAATTGGCAAGAAAAGCGGCCAAGG
AAATGTTTGAATTCGAGGTGGACTTGGCCCATGGACTGGTGGACAACAAC
AAACACCTGAACCTAAGGGACCTGATCGAACTTCTGACTGTCGCTGAATT
TGCGCGAGAGATATGCCCCCACCTTGGACACCGACCAATTGATATTCGTG
AGCATGGGAGAGAGATTTCCGACAGTCTACGATACACAGACGTTATCAGC
AATTTGGTCGAGTGATCGAGCGTACGCCCAGAGCACTGTGGCCAACTATT
TATTCTCGCTGATCTGGGAGTTATACGGAAACCAGTGGATGGCGAAAGCG
ACGAGCTGGTTGACTTCTCTACACGACTTACTCGCGAAAAATCTGACAC
FMO11473.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:24:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14527-RA | 2154 | CG14527-RA | 10..1061 | 7..1044 | 4880 | 98.4 | Plus |
| CG14526-RC | 2323 | CG14526-RC | 34..1046 | 21..1022 | 1960 | 80.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:24:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 28880801..28881807 | 7..1005 | 4610 | 99 | Plus |
| 3R | 32079331 | 3R | 28883726..28884499 | 21..794 | 1860 | 82.7 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:24:44 has no hits.
FMO11473.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-09 10:06:38 Download gff for
FMO11473.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14527-RA | 1..1053 | 9..1047 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:50:13 Download gff for
FMO11473.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14527-RA | 5..1064 | 1..1047 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:21:06 Download gff for
FMO11473.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14527-RA | 5..1064 | 1..1047 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:21:06 Download gff for
FMO11473.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 28880796..28881813 | 1..1009 | 98 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:50:13 Download gff for
FMO11473.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 24706518..24707535 | 1..1009 | 98 | <- | Plus |
