FMO11474.5prime Sequence
1120 bp (1029 high quality bases) assembled on 2011-12-09
> FMO11474.5prime
CAGTCGACATGGAGAGAGCTGAAGGGTGTGAAGTCGTCTCTCCGATCGAT
CAATCGCGGGGTGGAAAGGAAAGCGAAGCTTCCGCAGACGAATCACTGTT
GTTTTACTGCAAAAGCAAAGAGGCCGAAGTCAAACGCATAAACAAGGAGT
TGGCCAATATACGAAGCAAATTTAAAGGAGACAAAACCCTCGACGGCTAT
CAGAAAAAGAAATATGTCTGTAAGCTATTATTCATATTTCTCCTCGGCCA
TGACATCGACTTCGGGCACATGGAGGCGGTCAATTTGCTGTCCTCCAACA
AATACTCAGAAAAGCAGATTGGTTACCTTTTCATCTCAGTGTTGGTGAAC
ACCAACAGCGACCTTATTCGGCTGATCATCCAATCTATAAAGAATGATTT
GCAGTCGCGTAATCCTGTGCACGTTAATCTGGCACTACAATGCATTGCCA
ACATTGGAAGTCGGGATATGGCCGAGTCCTTTTCCAACGAAATACCCAAG
CTACTCGTCTCGGGCGACACCATGGACGTGGTGAAGCAGTCGGCGGCGCT
ATGCCTGCTCCGCCTGTTCCGCTCCTCGCCGGACATCATTCCCGGTGGTG
AGTGGACTTCGCGCATTATCCATTTGCTCAATGATCAGCACATGGGAGTG
GTCACAGCGGCCACCTCGCTGATCGACGCCTTGGTGAAGCGCAATCCGGA
CGAGTACAAGGGTTGTGTTAATTTGGCTGTTTCACGCTTATCCCGGATCG
TAACAGCCAGCTACACGGATCTTCAGATTACACATATTACTTTGTGCCGG
CTCCATGGCTATCGGTGAAACTTCTGCGATTGCTGCAAAACTACAATCCA
GTGACCGAAGAGGCCGGTGTGCGGGCCCGCTTGAATGAAACTTTGGAGAC
GATTTTGAACAAGGCGCAGAGCCGCCAAAGAGTAAGAGTGCAGCACTCTA
ACGCAAAGACGCCGTGCTCTTCGAGGCATCAACTGATCATTCACAGCGAC
AGCGAGCCGAACTTCTTGTCGGCGCTTGCACAGTTGGGACAGTTCCTAGC
ATCGGGAGAACACTTGGCCTATCTGCTCTGGGTCCATGGTGCCACTGCAA
TCGGGTTCCGCACGAGGAGG
FMO11474.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:24:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
AP-2alpha-RB | 3432 | CG4260-RB | 58..1193 | 5..1120 | 5090 | 97.6 | Plus |
AP-2alpha-RA | 4711 | CG4260-RA | 592..1626 | 106..1120 | 4585 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:24:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 411782..412237 | 776..321 | 2280 | 100 | Minus |
2L | 23513712 | 2L | 412446..412658 | 321..109 | 1050 | 99.5 | Minus |
2L | 23513712 | 2L | 411438..411718 | 1047..776 | 1010 | 96.4 | Minus |
2L | 23513712 | 2L | 412724..412828 | 109..5 | 525 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:24:52 has no hits.
FMO11474.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-09 10:06:38 Download gff for
FMO11474.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
alpha-Adaptin-RB | 55..1110 | 1..1047 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:50:17 Download gff for
FMO11474.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AP-2alpha-RB | 55..1110 | 1..1047 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:21:10 Download gff for
FMO11474.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AP-2alpha-RB | 55..1110 | 1..1047 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:21:10 Download gff for
FMO11474.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 411438..411718 | 777..1047 | 96 | <- | Minus |
2L | 411782..412237 | 321..776 | 100 | <- | Minus |
2L | 412447..412658 | 109..320 | 99 | <- | Minus |
2L | 412725..412830 | 1..108 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:50:17 Download gff for
FMO11474.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 411438..411718 | 777..1047 | 96 | <- | Minus |
arm_2L | 411782..412237 | 321..776 | 100 | <- | Minus |
arm_2L | 412447..412658 | 109..320 | 99 | <- | Minus |
arm_2L | 412725..412830 | 1..108 | 98 | | Minus |