Clone FMO11474 Report

Search the DGRC for FMO11474

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:114
Well:74
Vector:pMK33-CFH-BD
Associated Gene/Transcriptalpha-Adaptin-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11474.5prime Sequence

1120 bp (1029 high quality bases) assembled on 2011-12-09

> FMO11474.5prime
CAGTCGACATGGAGAGAGCTGAAGGGTGTGAAGTCGTCTCTCCGATCGAT
CAATCGCGGGGTGGAAAGGAAAGCGAAGCTTCCGCAGACGAATCACTGTT
GTTTTACTGCAAAAGCAAAGAGGCCGAAGTCAAACGCATAAACAAGGAGT
TGGCCAATATACGAAGCAAATTTAAAGGAGACAAAACCCTCGACGGCTAT
CAGAAAAAGAAATATGTCTGTAAGCTATTATTCATATTTCTCCTCGGCCA
TGACATCGACTTCGGGCACATGGAGGCGGTCAATTTGCTGTCCTCCAACA
AATACTCAGAAAAGCAGATTGGTTACCTTTTCATCTCAGTGTTGGTGAAC
ACCAACAGCGACCTTATTCGGCTGATCATCCAATCTATAAAGAATGATTT
GCAGTCGCGTAATCCTGTGCACGTTAATCTGGCACTACAATGCATTGCCA
ACATTGGAAGTCGGGATATGGCCGAGTCCTTTTCCAACGAAATACCCAAG
CTACTCGTCTCGGGCGACACCATGGACGTGGTGAAGCAGTCGGCGGCGCT
ATGCCTGCTCCGCCTGTTCCGCTCCTCGCCGGACATCATTCCCGGTGGTG
AGTGGACTTCGCGCATTATCCATTTGCTCAATGATCAGCACATGGGAGTG
GTCACAGCGGCCACCTCGCTGATCGACGCCTTGGTGAAGCGCAATCCGGA
CGAGTACAAGGGTTGTGTTAATTTGGCTGTTTCACGCTTATCCCGGATCG
TAACAGCCAGCTACACGGATCTTCAGATTACACATATTACTTTGTGCCGG
CTCCATGGCTATCGGTGAAACTTCTGCGATTGCTGCAAAACTACAATCCA
GTGACCGAAGAGGCCGGTGTGCGGGCCCGCTTGAATGAAACTTTGGAGAC
GATTTTGAACAAGGCGCAGAGCCGCCAAAGAGTAAGAGTGCAGCACTCTA
ACGCAAAGACGCCGTGCTCTTCGAGGCATCAACTGATCATTCACAGCGAC
AGCGAGCCGAACTTCTTGTCGGCGCTTGCACAGTTGGGACAGTTCCTAGC
ATCGGGAGAACACTTGGCCTATCTGCTCTGGGTCCATGGTGCCACTGCAA
TCGGGTTCCGCACGAGGAGG

FMO11474.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:24:54
Subject Length Description Subject Range Query Range Score Percent Strand
AP-2alpha-RB 3432 CG4260-RB 58..1193 5..1120 5090 97.6 Plus
AP-2alpha-RA 4711 CG4260-RA 592..1626 106..1120 4585 97.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:24:51
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 411782..412237 776..321 2280 100 Minus
2L 23513712 2L 412446..412658 321..109 1050 99.5 Minus
2L 23513712 2L 411438..411718 1047..776 1010 96.4 Minus
2L 23513712 2L 412724..412828 109..5 525 100 Minus
Blast to na_te.dros performed on 2014-11-27 20:24:52 has no hits.

FMO11474.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-09 10:06:38 Download gff for FMO11474.5prime
Subject Subject Range Query Range Percent Splice Strand
alpha-Adaptin-RB 55..1110 1..1047 98 == Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:50:17 Download gff for FMO11474.5prime
Subject Subject Range Query Range Percent Splice Strand
AP-2alpha-RB 55..1110 1..1047 98 == Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:21:10 Download gff for FMO11474.5prime
Subject Subject Range Query Range Percent Splice Strand
AP-2alpha-RB 55..1110 1..1047 98 == Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:21:10 Download gff for FMO11474.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 411438..411718 777..1047 96 <- Minus
2L 411782..412237 321..776 100 <- Minus
2L 412447..412658 109..320 99 <- Minus
2L 412725..412830 1..108 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:50:17 Download gff for FMO11474.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 411438..411718 777..1047 96 <- Minus
arm_2L 411782..412237 321..776 100 <- Minus
arm_2L 412447..412658 109..320 99 <- Minus
arm_2L 412725..412830 1..108 98   Minus