FMO11475.5prime Sequence
1119 bp (1018 high quality bases) assembled on 2011-12-09
> FMO11475.5prime
CAGTCGACATGGCAAGTTTACAAATTAGGATTGTACTTAGAAGGGAGAGC
AGAAAATCAAATTCCTGCATTGGCGGCAATCAATCGCCCACGGGCACGCC
GCGCCCCTTTCTGCGATCCAACACCCTTCCTCTGCGACAGCGACCCAGTC
CGGCGGAGGTCCAATATGAAAGCTACGTGCAGGCCACGGTGGCGGCCAAT
GCCAAGTCGCCGGTGGAGCAGCTGGAGAGCGCAAAGTCTCCAGGTGCTCC
GCCACCACCGCCTCCGAGGCGCCACCACCTGTTGGCCACCACGCCCACGG
GAAAACCCACTTTCAAGGAGGATCGACCGCAGGAGAATGGTTCCGTAAGC
AGCAGCTCCCTGCAGTCGCCAGTCATCTCGGAAACCGGTCAGACTACGGC
AGATGCACAAGCTCTGTTCCAGATACGAGAACAAATGGCCCTGAGCCTGA
GGCGTCTTAAGGATCTGGAGGAGCAGGTGAAAGTCATACCCGACATGGAG
CTGGAACTTAATTCTCTTCGCTCGGAAAAGCAGAAATTGCTGCGCAGAAA
CGAGGAGTTGATGCGAAGTCAGCGGCAGACGCCTTCGCCGCCAAGTCCGG
GACTCAAGACTGCCTCACCCGTGCAGTTCACTCCGCAAAGGATCAGTCCA
GTGTCGCTGGAGAGCCTAGGAGCACGCATGCGCAGCAGTTCCACCTCGGC
ATCTCCATCTCCAAGCGTTGTCCGTCGAGATGTCTCCACTCAAGCAGTGG
TGCGACCACCTGCCACACGAGATGTGTCCGTTGGCCACCAGCCCACCACG
AGAAATGTTGGAGTTCAGCCGTCGGAAACTGTCTACTCCAAGGAGGAGCT
GGATAAGATGTGGAGCAGGCACTACCCAATGCACAAAAGCAACAATTGAG
AAAGCTCATCTCTGTGGGCACCCAAATGTATGTGCCCAGAGGGACCAAAA
GATAGTGGAGTGCAAACACACCGGACGACCCAAACTCAGTACCATGTGGG
GAGTCACCGTGAAACCGGCAACAAGGAGAACTTTACCAGTTGCAGCCGGA
ATGTGCGTCATGGTGGCAGCTCTGATGATCGCTGATGATGTGCCTATGGC
AACATGGCGCGTCAGCAAG
FMO11475.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:25:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10249-RE | 3652 | CG10249-RE | 21..1140 | 8..1119 | 5115 | 98 | Plus |
| CG10249-RB | 3648 | CG10249-RB | 21..1140 | 8..1119 | 5115 | 98 | Plus |
| CG10249-RI | 4059 | CG10249-RI | 485..1551 | 61..1119 | 4850 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:24:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14904864..14905453 | 1082..499 | 2420 | 97.1 | Minus |
| 2R | 25286936 | 2R | 14905514..14905953 | 500..61 | 2200 | 100 | Minus |
| 2R | 25286936 | 2R | 14906018..14906070 | 60..8 | 265 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:25:01 has no hits.
FMO11475.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-09 10:06:39 Download gff for
FMO11475.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10249-RE | 4..1109 | 1..1098 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:50:21 Download gff for
FMO11475.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10249-RB | 13..1118 | 1..1098 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:21:13 Download gff for
FMO11475.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10249-RB | 13..1118 | 1..1098 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:21:13 Download gff for
FMO11475.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14905514..14905953 | 61..500 | 100 | <- | Minus |
| 2R | 14906018..14906076 | 1..60 | 93 | | Minus |
| 2R | 14904847..14905451 | 501..1098 | 97 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:50:21 Download gff for
FMO11475.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10792352..10792956 | 501..1098 | 97 | <- | Minus |
| arm_2R | 10793019..10793458 | 61..500 | 100 | <- | Minus |
| arm_2R | 10793523..10793581 | 1..60 | 93 | | Minus |
