FMO11476.5prime Sequence
1178 bp (1032 high quality bases) assembled on 2011-12-09
> FMO11476.5prime
CAGTCGACATGTCGTTACCGGCTGAAGAGGAGGATTTGGCGGACACTGTC
GCCAAGTACGATTCCATCGAATTGAAGAGCATACAGGACCTGGAAACCTG
CGAGCAGCAACAACTACTGCAGTACGTCGAAAAGCTGCACGGGATTATCC
GCAAATACGACACCAAACTGGCGTCCTATAAACAAAAACTCCTACACTAC
GTAAGCCGGGAAGAAAAGGTTTCGTGTGACAAAGCCAGCCAAGCAACTGA
ATCGGAATTACAAGAATGCCAGTATTCCATGGAAAACGATGAGGATACTA
ACAAAAAAGACCAGCCCAACGATTTATCGGCGACGGACGCCTTCAGTTTT
GTGGACGAAATGAGGCAGGCAGCCAAGCACGCCGAAAACCTGAACAACTT
CGTTTACGAGCACACCTCTGGCATGTACTACGATCCCAAGACGGGATACT
ACTATAACGCGGAGTACGGGCTGTACTACGATGGTAACAACGGCTGCTAC
TACAGCTATGATCACGCCAAAGACTCGTACGAGTTCCACTCTCAGGCCCA
GGCGAACGATGCGGCCAAACCGGAATCGGAGGACGAGGATTTGGAGGTGC
AGTTCGATGAGCTGGGAGGCGTCATTACGGACCACGAAACGCTGAAGAAG
ATTAAGGCCGAGAAGCAAAAGGCCAAAGATCAAGCTGAAAAATCCAAGCG
CAAAGCCAAGAAAAAGAAGAGTAAAAAGCACAGCAAGAAGAGATCCAAGA
AGGAGCGCCGTCACAAGTCCAAGAAGCGTCACAGGCATTCTGATGATGAG
CGGTCTAATGATGCCGAGGAGGGCGAGCTGTCGCAAAGCAGCGACTCCAG
TTCCGACTCTAGCAACGAGGATAGCAGCAGCAACACGGAAGACAGCAGTG
TTCCAGTTTCCAGGCTGCCGGACGCTTTCAGGACATTGCTAAAAGTATCC
ACCCCTCCCTCCGCATCATTGTCCAGGAGACTAACGTAGAGTCGCTGAAG
TGTGGAAGCCTGCATTCTAATCCACATACAAAGGTGAATTCTCCTTGGAC
GGGAGGGCGCCTCACGATGTATCATTCGACGTGAACGGTCAGCAGTGCAC
TTAAGTTTAGGATAGAAAACAGTTGGGATCTACAATGTCTTGTGAATCTG
GGCTCCCGCGAACGCGTTACCAAATTTT
FMO11476.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:25:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8079-RB | 2218 | CG8079-RB | 84..1234 | 9..1158 | 5145 | 97.4 | Plus |
| CG8079-RA | 2156 | CG8079-RA | 84..1240 | 9..1158 | 5075 | 96.9 | Plus |
| CG8079-RE | 2096 | CG8079-RE | 86..629 | 9..552 | 2720 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:25:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 15222041..15222423 | 549..930 | 1850 | 99.5 | Plus |
| 2R | 25286936 | 2R | 15218464..15218657 | 9..202 | 970 | 100 | Plus |
| 2R | 25286936 | 2R | 15221429..15221566 | 325..462 | 690 | 100 | Plus |
| 2R | 25286936 | 2R | 15218713..15218836 | 201..324 | 620 | 100 | Plus |
| 2R | 25286936 | 2R | 15221727..15221818 | 461..552 | 460 | 100 | Plus |
| 2R | 25286936 | 2R | 15222506..15222620 | 941..1060 | 280 | 90 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:25:11 has no hits.
FMO11476.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-09 10:06:40 Download gff for
FMO11476.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8079-RB | 84..1245 | 9..1172 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:50:25 Download gff for
FMO11476.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8079-RB | 84..1245 | 9..1172 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:21:17 Download gff for
FMO11476.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8079-RB | 84..1245 | 9..1172 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:21:17 Download gff for
FMO11476.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 15221429..15221565 | 325..461 | 100 | -> | Plus |
| 2R | 15221728..15221817 | 462..551 | 100 | -> | Plus |
| 2R | 15218464..15218655 | 9..200 | 100 | -> | Plus |
| 2R | 15218713..15218836 | 201..324 | 100 | -> | Plus |
| 2R | 15222044..15222427 | 552..932 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:50:25 Download gff for
FMO11476.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11105969..11106160 | 9..200 | 100 | -> | Plus |
| arm_2R | 11106218..11106341 | 201..324 | 100 | -> | Plus |
| arm_2R | 11108934..11109070 | 325..461 | 100 | -> | Plus |
| arm_2R | 11109233..11109322 | 462..551 | 100 | -> | Plus |
| arm_2R | 11109549..11109932 | 552..932 | 98 | -> | Plus |
