FMO11477.5prime Sequence
1124 bp (1014 high quality bases) assembled on 2011-12-09
> FMO11477.5prime
CAGTCGACATGTTCCCGTCGTCGATTTTGGGGCGCAGCTATTTGCTTTTT
ATGCTGGTGCTCGCCGTGGGCGTGTTCGCCCAACACGAGTGGCAGGCCCG
GGATGCCTTTGATGAGATAAAGAGGCAGTTCGACAAGGTGAACGCGGATA
ACTGCCCCATCCAACACCATTCGGACCTTTTCATGCCCATGGACGCGGTG
TCCCACAAGCCGGACATCAAGGAGATCAACGTGAATCCGGTGTTCCCCAA
CCGAACTGCCCTGCTGCATCTGCAGAATATGGCCCTTAGCAGAAGCTTCT
TCTGGAGCTACATCCTCCAGTCGAGGTTTATTCGACCCGCCATCAACGAC
ACCTACGATCCCGGCATGATGTACTACTTTCTGTCCACCGTAGCCGATGT
ATCCGCCAACCCACATATCAACGCCTCGGCCGTGTACTTCTCCCCCAACA
GCTCGTATTCGTCGTCGTATCGCGGCTTCTTCAATAAGACGTTCCCCAGA
TTCGGGCCAAGAACCTTCAGGCTGGACGACTTCAACGATCCCATTCATCT
GCAGAAGATATCGACGTGGAATACTTTCGATGTTCAGGATCTGGGCGCCC
ATCACCCGGACTCCATATCCAAGGACTACACCCACGACCTGTATAAAATA
AACGAGTGGTACCGCGCCTGGCTACCAGACAACGTCGAGGGACGGCACGA
TACGAAGATCACCTACCAGGTGGAAATCCGCTATGCGAACAACACAAACG
AGACGTATACCTTCCACGGACCGCCTGGCTCTGAAGAAAACCCTGGTCCG
ATTAAATTTACAAGGCCGTACTTCGATTGTGGCAGGTCCAACAAGTGGCT
GGTGGCCGCAGTAGTGCCAATTGCGGATATCTACCCCCGACACACGCAGT
TCCGTCACATTGAGTATCCCAAATACACGGGCCGTTTCGGTTCTGAGATG
GACTTCGAGCGTATCGACATAAACCAGTGTCATTGGGGTGAGCAACAAAG
ACCTATCACTTTGCGATACGGCGCGGTGTAAAAGGAACGACGATGTGGTG
ACAATTACAAGCTGGGGCCTTTAGGCGCGGTGGCTACATGTGCCGTGTAA
GCCAGGTCGCTGCACGTAGTGCGG
FMO11477.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:25:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31195-RB | 4001 | CG31195-RB | 223..1329 | 9..1107 | 5070 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:25:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 20761234..20762147 | 922..9 | 4570 | 100 | Minus |
| 3R | 32079331 | 3R | 20760983..20761169 | 1107..930 | 300 | 86.1 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:25:21 has no hits.
FMO11477.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-09 10:06:40 Download gff for
FMO11477.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31195-RB | 211..1325 | 1..1107 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:50:29 Download gff for
FMO11477.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31195-RB | 215..1329 | 1..1107 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:21:20 Download gff for
FMO11477.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31195-RB | 215..1329 | 1..1107 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:21:20 Download gff for
FMO11477.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 20761234..20762155 | 1..922 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:50:29 Download gff for
FMO11477.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16586956..16587877 | 1..922 | 99 | | Minus |
