Clone FMO11478 Report

Search the DGRC for FMO11478

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:114
Well:78
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG14128-RE
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11478.5prime Sequence

1164 bp (1016 high quality bases) assembled on 2011-12-09

> FMO11478.5prime
CAGTCGACATGTTGCACTGCCAAGTGGAAGGGGCAAAAGCAGAGCAACGT
GAGTGTCCTGTGATGCACTCAGAGAATTCTGCGGAAACTTTCAGTTCGGA
GGAATCCCAAGCCAGTGACTGTAACCAGCCGTTGGATGTTCAAAGTCCAA
AGCTGACAACAAACATAGAAGAGTCCTTTAAGGTGGACTGTAAGCTTTCG
CTGAATACTCTTCTGTCACCTATTAATATCACCGATCCATTGCTCATGTG
TTCTATATCAGAGTTTAACAAAGAGGAACAAACTATGGAGCCGTATTTTA
TTCAGGAATTAGATATGGCTTGTGCTGGCCAAGAAGTTGAGCAAGTTGCG
GAGGAAAATGTATTCGAAACTGGACCACAGTTGAAGCTACCGGAAAATCA
ACCTATCAACGATTCGATAACAACAGAAACTAATGAAACGAAGTTACCGT
CAACGGAAGCACTAAATGTTTTAAATTTAGCAGAATTCAGTGAACCAGTA
ATGGAAAAATCAAATATATCCATTGAAGAAGTCAATCTTACAGGAGCCGA
AGAAATAAATGAACCCATAAGTGATGAACCAAATAGTCAACTAGTTGAAA
GTGCTGCCAAACTACAGCCAAAATCACTTGGAATTCAAATACCTCCTCTA
CAGATCGAAGATTTGATTTCTCCATTAGTAGAACAACCGAAGATAGCAAC
TAAACTGGGTGTTATTAGTTTCTTGACAGGAAACAAGTTGGCTTTAACGC
CCAGTGTAAGGCTCTCTTTTGGTGATAGAGTAACGACCAGGACAAACAAA
AAATCCAAGGAAATTGTTCAACAGCAAGCTTCTAAAGCACTAAAGGCGTT
AATTTCAGTTTTCACAATGCAGCGAAAGGCTAGAGGCATCACAGTGTGAT
AATTCCAATAATAGCCGATCGAAACGATTTGAACAACTAAAAGCTCCTTT
AACCTTTTTCACGAGTATTTTAGGCGTCCATTCTTTTCAGCCACTTTCGA
AAAAAAGAAAGGCCGCCAGCAAAAATACTGATGCTTACTCCCTTGGAGTC
TGGGGAACCCAATTTTAAAGTACAGGCGCATACCAGAACCACTACCCATA
CCCTTACCGACCAGAATGCCTGGCGAGACATACCTTGTATGGCTGACGTA
AGCAGATTCAGTTT

FMO11478.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:13:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG14128-RE 1898 CG14128-RE 47..1200 8..1164 5040 96.7 Plus
CG14128-RC 1847 CG14128-RC 47..1200 8..1164 5040 96.7 Plus
CG14128-RF 1950 CG14128-RF 335..1252 244..1164 3860 95.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:13:12
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11879510..11880167 244..902 3230 99.7 Plus
3L 28110227 3L 11879220..11879455 8..243 1180 100 Plus
3L 28110227 3L 11880220..11880421 898..1104 335 85.2 Plus
Blast to na_te.dros performed on 2014-11-27 20:13:14 has no hits.

FMO11478.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-09 10:05:44 Download gff for FMO11478.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14128-RE 47..1007 8..970 99 == Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:44:49 Download gff for FMO11478.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14128-RC 47..1007 8..970 99 == Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:16:42 Download gff for FMO11478.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14128-RC 47..1007 8..970 99 == Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:16:42 Download gff for FMO11478.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 11879220..11879455 8..243 100 -> Plus
3L 11879510..11880163 244..898 99 -> Plus
3L 11880221..11880291 899..970 95 == Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:44:49 Download gff for FMO11478.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11872320..11872555 8..243 100 -> Plus
arm_3L 11872610..11873263 244..898 99 -> Plus
arm_3L 11873321..11873391 899..970 95 == Plus