FMO11478.5prime Sequence
1164 bp (1016 high quality bases) assembled on 2011-12-09
> FMO11478.5prime
CAGTCGACATGTTGCACTGCCAAGTGGAAGGGGCAAAAGCAGAGCAACGT
GAGTGTCCTGTGATGCACTCAGAGAATTCTGCGGAAACTTTCAGTTCGGA
GGAATCCCAAGCCAGTGACTGTAACCAGCCGTTGGATGTTCAAAGTCCAA
AGCTGACAACAAACATAGAAGAGTCCTTTAAGGTGGACTGTAAGCTTTCG
CTGAATACTCTTCTGTCACCTATTAATATCACCGATCCATTGCTCATGTG
TTCTATATCAGAGTTTAACAAAGAGGAACAAACTATGGAGCCGTATTTTA
TTCAGGAATTAGATATGGCTTGTGCTGGCCAAGAAGTTGAGCAAGTTGCG
GAGGAAAATGTATTCGAAACTGGACCACAGTTGAAGCTACCGGAAAATCA
ACCTATCAACGATTCGATAACAACAGAAACTAATGAAACGAAGTTACCGT
CAACGGAAGCACTAAATGTTTTAAATTTAGCAGAATTCAGTGAACCAGTA
ATGGAAAAATCAAATATATCCATTGAAGAAGTCAATCTTACAGGAGCCGA
AGAAATAAATGAACCCATAAGTGATGAACCAAATAGTCAACTAGTTGAAA
GTGCTGCCAAACTACAGCCAAAATCACTTGGAATTCAAATACCTCCTCTA
CAGATCGAAGATTTGATTTCTCCATTAGTAGAACAACCGAAGATAGCAAC
TAAACTGGGTGTTATTAGTTTCTTGACAGGAAACAAGTTGGCTTTAACGC
CCAGTGTAAGGCTCTCTTTTGGTGATAGAGTAACGACCAGGACAAACAAA
AAATCCAAGGAAATTGTTCAACAGCAAGCTTCTAAAGCACTAAAGGCGTT
AATTTCAGTTTTCACAATGCAGCGAAAGGCTAGAGGCATCACAGTGTGAT
AATTCCAATAATAGCCGATCGAAACGATTTGAACAACTAAAAGCTCCTTT
AACCTTTTTCACGAGTATTTTAGGCGTCCATTCTTTTCAGCCACTTTCGA
AAAAAAGAAAGGCCGCCAGCAAAAATACTGATGCTTACTCCCTTGGAGTC
TGGGGAACCCAATTTTAAAGTACAGGCGCATACCAGAACCACTACCCATA
CCCTTACCGACCAGAATGCCTGGCGAGACATACCTTGTATGGCTGACGTA
AGCAGATTCAGTTT
FMO11478.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:13:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14128-RE | 1898 | CG14128-RE | 47..1200 | 8..1164 | 5040 | 96.7 | Plus |
CG14128-RC | 1847 | CG14128-RC | 47..1200 | 8..1164 | 5040 | 96.7 | Plus |
CG14128-RF | 1950 | CG14128-RF | 335..1252 | 244..1164 | 3860 | 95.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:13:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11879510..11880167 | 244..902 | 3230 | 99.7 | Plus |
3L | 28110227 | 3L | 11879220..11879455 | 8..243 | 1180 | 100 | Plus |
3L | 28110227 | 3L | 11880220..11880421 | 898..1104 | 335 | 85.2 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:13:14 has no hits.
FMO11478.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-09 10:05:44 Download gff for
FMO11478.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14128-RE | 47..1007 | 8..970 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:44:49 Download gff for
FMO11478.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14128-RC | 47..1007 | 8..970 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:16:42 Download gff for
FMO11478.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14128-RC | 47..1007 | 8..970 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:16:42 Download gff for
FMO11478.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11879220..11879455 | 8..243 | 100 | -> | Plus |
3L | 11879510..11880163 | 244..898 | 99 | -> | Plus |
3L | 11880221..11880291 | 899..970 | 95 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:44:49 Download gff for
FMO11478.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11872320..11872555 | 8..243 | 100 | -> | Plus |
arm_3L | 11872610..11873263 | 244..898 | 99 | -> | Plus |
arm_3L | 11873321..11873391 | 899..970 | 95 | == | Plus |