FMO11479.5prime Sequence
1119 bp (1016 high quality bases) assembled on 2011-12-09
> FMO11479.5prime
CAGTCGACATGGTTCGAGTATCGCTAGTTCCATTCATTATAATCGGATTT
ATGGCGCACTTTTGTGCGTGTGAGGATGTTACATCCTCAGATCTTCTGTA
TATTAAGACCATGGGACCCTCGGCGATTTTAACAAAAATGCCGAACATAA
CCAATGAGTTTAGTTCAAGAATTTTCAGTTCTTTTCGCATATTGCCATCA
TCAAAGCCAAAAACAAATGGATCGCTTAAGCGTAGTCAAAACGCCACGAA
CTTGAGTTACTCCTCCTCTGAGATTTCCAATCAAAGACGAGTTCGACGAA
AAGCAGCGGCCGACATGCTTAGCCGTAATATCTCAATGATTTTGGAAAAT
CTACTCAAACGCTACGAGCAATCCCAACTACCCACGCATGGCCAGGGAGT
TCCGACGGTGGTGCAAACGAATATCCTAATCCGTAGCATGGGTCCAGTTT
CCGAATTGGACATGGACTACTCGATGGATTGCTATTTCCGGCAGTATTGG
CGGGACAAACGGCTGAGCTTCAAGGGACCCATCAAGAGCTTATCTCTGAG
CATCAAAATGCTGGACAAGATCTGGAGGCCAGATACATATTTTTACAATG
GCAAGCACTCGCAAATTCACATGATTACCGTGCCCAATAAATTGCTTCGA
TTGGATCAGAATGGAGGGATTCTGTATTCAATGAGACTAACAATTAAGGC
TACTTGTCCCATGGAGCTGCAAAACTTTCCAATGGATAGACAATCATGCC
CTCTAGTAATTGGAAGTTATGGCTATATTAACCAACAGTTGATCTATGAA
TGGAAAAATCACGACGATGCGGTGTCCTTTGTTCCAGGAATGACTCTAAA
TCAATTCGATCTCATTAGCATGATGCATCGCAATTTTACAACCGTTCGAC
GGGAAAGGTGATTTTTCAGTCCTGCATGTAGCTTTTAATTCTCAAACGTC
ACACAGGAATATTTCTCATTCAAGGTATTATGTACCCTGTATCTGATCGT
GGTACTGTCATGGGTCCTCTTCTGGATACATCGCCGAAGCCACACGAACA
GAATGAGTCTTGCGGTTACTCATGCTGACCTGTCCACCATTAGTCTTGAC
CTCCGAACGGAATTGGCAA
FMO11479.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:13:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8916-RB | 2019 | CG8916-RB | 148..1258 | 9..1119 | 5030 | 97.7 | Plus |
| CG8916-RC | 1859 | CG8916-RC | 185..1098 | 206..1119 | 4045 | 97.2 | Plus |
| CG8916-RC | 1859 | CG8916-RC | 148..185 | 9..46 | 190 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:13:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15922468..15923107 | 46..685 | 3200 | 100 | Plus |
| X | 23542271 | X | 15923320..15923523 | 769..974 | 870 | 97.1 | Plus |
| X | 23542271 | X | 15923166..15923250 | 684..768 | 425 | 100 | Plus |
| X | 23542271 | X | 15923595..15923651 | 979..1034 | 205 | 94.7 | Plus |
| X | 23542271 | X | 15922102..15922139 | 9..46 | 190 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:13:22 has no hits.
FMO11479.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-09 10:05:44 Download gff for
FMO11479.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8916-RB | 148..1254 | 9..1115 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:44:53 Download gff for
FMO11479.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8916-RB | 148..1254 | 9..1115 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:16:46 Download gff for
FMO11479.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8916-RB | 148..1254 | 9..1115 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:16:46 Download gff for
FMO11479.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15922102..15922139 | 9..46 | 100 | -> | Plus |
| X | 15922469..15923107 | 47..685 | 100 | -> | Plus |
| X | 15923168..15923250 | 686..768 | 100 | -> | Plus |
| X | 15923320..15923522 | 769..974 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:44:53 Download gff for
FMO11479.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15816135..15816172 | 9..46 | 100 | -> | Plus |
| arm_X | 15816502..15817140 | 47..685 | 100 | -> | Plus |
| arm_X | 15817201..15817283 | 686..768 | 100 | -> | Plus |
| arm_X | 15817353..15817555 | 769..974 | 97 | -> | Plus |
