FMO11480.5prime Sequence
1165 bp (1056 high quality bases) assembled on 2011-12-09
> FMO11480.5prime
CAGTCGACATGTTGCACTGCCAAGTGGAAGGGGCAAAAGCAGAGCAACGT
GAGTGTCCTGTGATGCACTCAGAGAATTCTGCGGAAACTTTCAGTTCGGA
GGAATCCCAAGCCAGTGACTGTAACCAGCCGTTGGATGTTCAAAGTCCAA
AGCTGACAACAAACATAGAAGAGTCCTTTAAGGTGGACTGTAAGCTTTCG
CTGAATACTCTTCTGTCACCTATTAATATCACCGATCCATTGCTCATGTG
TTCTATATCAGAGTTTAACAAAGAGGAACAAACTATGGAGCCGTATTTTA
TTCAGGAATTAGATATGGCTTGTGCTGGCCAAGAAGTTGAGCAAGTTGCG
GAGGAAAATGTATTCGAAACTGGACCACAGTTGAAGCTACCGGAAAATCA
ACCTATCAACGATTCGATAACAACAGAAACTAATGAAACGAAGTTACCGT
CAACGGAAGCACTAAATGTTTTAAATTTAGCAGAATTCAGTGAACCAGTA
ATGGAAAAATCAAATATATCCATTGAAGAAGTCAATCTTACAGGAGCCGA
AGAAATAAATGAACCCATAAGTGATGAACCAAATAGTCAACTAGTTGAAA
GTGCTGCCAAACTACAGCCAAAATCACTTGGAATTCAAATACCTCCTCTA
CAGATCGAAGATTTGATTTCTCCATTAGTAGAACAACCGAAGATAGCAAC
TAAACTGGGTGTTATTAGTTTCTTGACAGGAAACAAGTTGGCTTTAACGC
CCAGTGTAAAGCTCTCTTTTGGTGATAGAGTAACGACCAGGACAAACAAA
AAATCCAAGGAAATTGTTCAACAGCAAGCTTCTAAAGCACTAAAGGCGTT
AATTTCAGTTTTCACAATGCAGCGAAAGGCTAGAGGCATCACAGTGTGAT
AATTCCAATAATAGCCGATCGAAACGATTTGAACACTAAAAGCTCTTTAA
CCTTTCACGAGTATTTAGGCAGACATCTTTCAGCCACTTCGAAGAAAGAA
AGCCGCCAGCAGATACTGATGCTAACTCACTGGAGTCTGGGACCATTTAA
AAGTACAGCGCAATACAAGAACCACTACCCATACCCTACGGACAGATGCT
GCGAGACTACTGTATGCTTGACCGTAGCAGATTCAGTTTATGAGCTCCGA
AGTGATGTATCGGAG
FMO11480.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:13:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14128-RE | 1898 | CG14128-RE | 47..1232 | 8..1165 | 5125 | 96.9 | Plus |
| CG14128-RC | 1847 | CG14128-RC | 47..1232 | 8..1165 | 5125 | 96.9 | Plus |
| CG14128-RF | 1950 | CG14128-RF | 335..1284 | 244..1165 | 3945 | 96.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:13:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11879510..11880167 | 244..902 | 3215 | 99.5 | Plus |
| 3L | 28110227 | 3L | 11879220..11879455 | 8..243 | 1180 | 100 | Plus |
| 3L | 28110227 | 3L | 11880220..11880428 | 898..1094 | 450 | 90 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:13:34 has no hits.
FMO11480.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-09 10:05:45 Download gff for
FMO11480.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14128-RE | 47..1139 | 8..1089 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:45:00 Download gff for
FMO11480.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14128-RC | 47..1139 | 8..1089 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:16:52 Download gff for
FMO11480.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14128-RC | 47..1139 | 8..1089 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:16:52 Download gff for
FMO11480.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11879220..11879455 | 8..243 | 100 | -> | Plus |
| 3L | 11879510..11880163 | 244..898 | 99 | -> | Plus |
| 3L | 11880221..11880447 | 899..1109 | 91 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:45:00 Download gff for
FMO11480.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11872320..11872555 | 8..243 | 100 | -> | Plus |
| arm_3L | 11872610..11873263 | 244..898 | 99 | -> | Plus |
| arm_3L | 11873321..11873547 | 899..1109 | 91 | == | Plus |
