FMO11481.5prime Sequence
1126 bp (1033 high quality bases) assembled on 2011-12-09
> FMO11481.5prime
CAGTCGACATGAAGACACGTTTCAATACCTTCGATATAATCTGCGGAGTG
GCGGAACTGCAAAAGCTGGTCGGCTGGCGAGTGAATCAGATCTATGACGT
GGATAACAAGACCTACCTCTTCCGGATGCAAGGGACCGGTGCAGTGGAGA
AGGTCACTCTGCTAATAGAATCTGGTACAAGATTCCATACCACTAGGTTC
GAATGGCCCAAGAACATGGCTCCGTCCGGTTTCAGCATGAAGTTGAGGAA
GCACTTGAAGAACAAGCGCCTGGAAAAGGTTCAACAGATGGGTAGCGATC
GTATTGTTGACTTTCAGTTCGGTACCGGTGATGCCGCCTACCATGTTATT
TTGGAGCTCTACGATCGTGGTAATGTGATCCTCACCGACTACGAGCTGAC
CACGTTATATATTTTGCGTCCGCATACGGAGGGCGAGAACCTGCGCTTCG
CCATGCGCGAGAAATATCCCGTGGAACGGGCCAAACAGCCCACGAAGGAA
CTGGAACTGGAAGCTTTGGTTAAGCTGTTGGAAAATGCCAGGAACGGCGA
CTATTTGCGACAGATTCTAACACCCAACTTGGACTGTGGTCCGGCAGTTA
TAGAGCATGTTCTCCTCTCACACGGCTTGGACAATCACGTTATCAAAAAG
GAAACAACGGAAGAAACGCCGGAGGCGGAGGACAAGCCGGAGAAGGGCGG
TAAAAAGCAACGTAAGAAGCAACAGAATACGAAACTGGAACAGAAACCAT
TTGACATGGTTAATGACTTGCCAATTCTTCAGCAAGCAGTAAAGGATGCT
CAAGAGCTTATAGCTGAGGGAAATAGTGGAAAAAGTAAAGGCTACATTAT
TCAAGTTAAAGAGGAAAAGCCTACAGAGAATGGAACGGTGAGTTTTCTTT
AGAAACATCGAATTTCATCCCTACCTCTTTATTCAATTCAAAACTTTGAA
AAGGCCACATTTGAGTCCTTTATGGAGCCGTTGATGATTTTACTCTACGC
AGAGTCGCAAAGATTGACATGAAACGCTACAGCAAGGAGCGGTGAGGCAC
TAAAAAGCTGTTCTAATGTCAGAATGACCACGCAAGCGCTCTAAGGAATG
GACAAAGTTCAGAGGGACAGAAGAAG
FMO11481.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:13:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Clbn-RC | 3258 | CG11847-RC | 169..1275 | 8..1106 | 5140 | 98.5 | Plus |
| Clbn-RB | 3270 | CG11847-RB | 181..1287 | 8..1106 | 5140 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:13:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25127932..25128662 | 65..795 | 3655 | 100 | Plus |
| Y | 3667352 | Y | 3042183..3042502 | 399..65 | 1370 | 94.6 | Minus |
| Y | 3667352 | Y | 3027579..3027898 | 399..65 | 1355 | 94.3 | Minus |
| Y | 3667352 | Y | 3034870..3035189 | 399..65 | 1355 | 94.3 | Minus |
| 3R | 32079331 | 3R | 25128731..25129030 | 793..1085 | 890 | 94 | Plus |
| Y | 3667352 | Y | 3026989..3027227 | 1024..793 | 775 | 94.1 | Minus |
| Y | 3667352 | Y | 3034280..3034518 | 1024..793 | 745 | 93.3 | Minus |
| Y | 3667352 | Y | 3041593..3041831 | 1024..793 | 745 | 93.3 | Minus |
| Y | 3667352 | Y | 3027412..3027575 | 652..484 | 645 | 93.5 | Minus |
| Y | 3667352 | Y | 3034703..3034866 | 652..484 | 645 | 93.5 | Minus |
| Y | 3667352 | Y | 3042016..3042179 | 652..484 | 645 | 93.5 | Minus |
| Y | 3667352 | Y | 3027296..3027414 | 795..677 | 595 | 100 | Minus |
| Y | 3667352 | Y | 3034587..3034705 | 795..677 | 595 | 100 | Minus |
| Y | 3667352 | Y | 3041900..3042018 | 795..677 | 595 | 100 | Minus |
| 3R | 32079331 | 3R | 25127810..25127867 | 8..65 | 290 | 100 | Plus |
| Y | 3667352 | Y | 3027963..3028020 | 65..8 | 290 | 100 | Minus |
| Y | 3667352 | Y | 3035254..3035311 | 65..8 | 290 | 100 | Minus |
| Y | 3667352 | Y | 3042567..3042624 | 65..8 | 290 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:13:43 has no hits.
FMO11481.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-09 10:05:46 Download gff for
FMO11481.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Clbn-RC | 169..1275 | 8..1106 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:45:05 Download gff for
FMO11481.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Clbn-RB | 181..1287 | 8..1106 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:16:55 Download gff for
FMO11481.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Clbn-RB | 181..1287 | 8..1106 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:16:55 Download gff for
FMO11481.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25127810..25127866 | 8..64 | 100 | -> | Plus |
| 3R | 25127932..25128661 | 65..794 | 100 | -> | Plus |
| 3R | 25128733..25129052 | 795..1106 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:45:05 Download gff for
FMO11481.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20953532..20953588 | 8..64 | 100 | -> | Plus |
| arm_3R | 20953654..20954383 | 65..794 | 100 | -> | Plus |
| arm_3R | 20954455..20954774 | 795..1106 | 94 | | Plus |
