FMO11482.5prime Sequence
1121 bp (983 high quality bases) assembled on 2011-12-09
> FMO11482.5prime
CAGTCGACATGAGCAGGAATCGTAGGCGAAGCTTCCCCAGCAGCCAATAT
GAAGATAAGACCGCCGCTGCACAGCCAAGTGGAAGTAGCTTGAGATCCCA
ATCTCTGTCCAGGCTGGACATCTCGGTTCAAAACTCATCCATCTATTACA
ATGATACGCGAAACACGCGACCACAAATGGTCAGTGTGGCCGTCGGCACA
GTTTCAACGGATATCCTGAATGGGCGCACATCATTCTTGTCCCTTAGTCA
GTCTCACGGGAGTGAAGTGGATTTGCCTTCGTTCTACGAAAGCTTTAATC
CAACTTTTCTTCCCAAGCTGCCTATCAGAAGATTTCCCCATATGCTTGTG
GGGGCATCAAATGAGCCTGAGATTTCGAAAAACCAGCCAGCAATTCCACC
ATCTAGGCCAATTGAGCCAATATCTGAGGTGCCGTTTGTGGAACCGGCCT
TTGAGAAAAAATACTCTAGGACCCGTGGATTTAGCAAGGAATTGTCCACA
CACAGGGATAATGAGAATGAATATATCGAGAGCACAGATGAGGTGTCTCA
GATGTTGAGCTTTACTAGCTATACGGATGAATATGATAGGGCAGAACCAC
TCATTACCAAAACGCAAAAGTTTTATAAAAAGAGATCCCCCTTGATTCCC
AAATACGATTCCGAGGATTCATATGTGGTCCCTAAGGAAACCGATCAACA
GGAATCGGGTCTCTCGTTCAATGTAACTACAGTACAGTTGGCCGATACCG
CATCGCCGGAATCTTTCAGCGAATACGACGGAAATCGAACGCGCAAGCAA
TCGTTCGACATGGAAAGTAAAAATTCGAAGAAGTCCTTTGACTTTAGCCG
TGGTGGAAAGACGACTTGGCTCCGGTTTGGTTTTTATCTATATGGTGATA
CCACCGGGACGCCGAATCCGTTGGGGTAATCATGGGTGCTGTCCTTCCCT
CGCCCAACTGATAATCGATGTTTAATTTTTAACAATTGGGGTCTTATTGC
ATCCATTGCCAAGAATGGGATGTCTCCAAATCGTCGTATCGGTTGTGGCA
GTGTCCAGAATTGTTGCTACTCAACTAACCGGAACGTTTCTGCTGTACTT
GAATAAATCGTTTGTCGAAGT
FMO11482.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:13:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12866-RB | 2806 | CG12866-RB | 26..1128 | 9..1113 | 4890 | 96.8 | Plus |
| CG12866-RD | 2815 | CG12866-RD | 26..1128 | 9..1113 | 4890 | 96.8 | Plus |
| CG12866-RE | 2810 | CG12866-RE | 26..1132 | 9..1113 | 4840 | 96.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:13:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14668497..14669101 | 30..634 | 3025 | 100 | Plus |
| 2R | 25286936 | 2R | 14669268..14669518 | 634..885 | 1180 | 98.8 | Plus |
| 2R | 25286936 | 2R | 14669587..14669773 | 886..1071 | 330 | 86.8 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:13:52 has no hits.
FMO11482.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-09 10:05:46 Download gff for
FMO11482.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12866-RB | 16..1099 | 1..1083 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:45:10 Download gff for
FMO11482.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12866-RD | 16..1099 | 1..1083 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:16:59 Download gff for
FMO11482.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12866-RD | 16..1099 | 1..1083 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:16:59 Download gff for
FMO11482.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14668499..14669100 | 32..633 | 100 | -> | Plus |
| 2R | 14669268..14669518 | 634..885 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:45:10 Download gff for
FMO11482.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10556004..10556605 | 32..633 | 100 | -> | Plus |
| arm_2R | 10556773..10557023 | 634..885 | 98 | -> | Plus |
