FMO11483.5prime Sequence
1102 bp (1009 high quality bases) assembled on 2011-12-09
> FMO11483.5prime
CAGTCGACATGAACTCGGCGGTGGATGCGTGGGCTGTGACCCCGAGGGAG
CGTTTGAAGTACCAGGAACAGTTTAGGGCACTCCAGCCGCAGGCAGGATT
CGTTACCGGCGCCCAGGCCAAAGGGTTCTTCCTGCAGTCCCAGCTGCCGC
CCCTGATCCTTGGCCAAATATGGGCTCTGGCGGACACTGATTCCGACGGC
AAGATGAACATCAATGAGTTCAGCATAGCCTGCAAGCTTATCAACCTCAA
GTTGCGCGGCATGGACGTTCCCAAGGTTCTTCCTCCCAGCCTGCTGTCGT
CTCTTACCGGCGATGTCCCCTCGATGACGCCACGTGGCTCCACAAGCTCC
TTGAGCCCTTTGGATCCACTCAAGGGAATAGTTCCGGCAGTAGCTCCAGT
TGTTCCCGTTGTGGCTCCACCGGTGGCTGTGGCTACTGTCATTTCACCGC
CTGGAGTCTCAGTGCCGTCTGGCCCCACACCCCCCACCAGCAATCCACCT
AGTCGCCACACGTCTATCTCAGAGCGAGCGCCATCGATCGAGTCTGTCAA
CCAAGGAGAATGGGCCGTTCAAGCTGCCCAAAAGCGTAAATACACGCAGG
TGTTCAATGCTAATGATCGCACCCGATCTGGTTACTTAACTGGATCCCAG
GCACGCGGCGTTCTCGTACAGAGCAAGTTACCCCAGGTCACGCTGGCCCA
AATCTGGACGCTGTCCGACATCGACGGCGATGGACGGCTGAACTGCGACG
AGTTTATTCTTGCCATGTTCCTATGCGAGAAGGCCATGGCTGGTGAGAAA
ATTCCGGTTACCTTGCCCCAGGAATGGGTACCGCCCAACTTGCGCAAATA
AAATCGCGACCGGGATCGGTCTCAGGGTGTATCCCGTCCTGCTCACAGCC
GGCCTCCCGACACGCATCTGTTTCATCCCAAGCGGAGTGGGAGTCGTGAT
GCTGACCAACAGCCGGACTACCTGGACAAACTTCCTCGAGACAGCGAAAG
AGAATTATGTAAGGGTCAAGCGAGCCTGATCGTAGGCCCAATATGAGACC
GCACGCAGGACGGAGAGGATAGAAGACAAGGACGTGAAAGGCTGATAGCG
TG
FMO11483.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:14:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dap160-RH | 5171 | CG1099-RH | 334..1379 | 9..1041 | 4845 | 98.4 | Plus |
Dap160-RG | 5420 | CG1099-RG | 334..1379 | 9..1041 | 4845 | 98.4 | Plus |
Dap160-RC | 3970 | CG1099-RC | 334..1379 | 9..1041 | 4845 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:13:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 21141178..21141553 | 547..172 | 1880 | 100 | Minus |
2L | 23513712 | 2L | 21140569..21141008 | 980..548 | 1870 | 98.2 | Minus |
2L | 23513712 | 2L | 21141624..21141788 | 173..9 | 810 | 99.4 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:14:01 has no hits.
FMO11483.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-09 10:05:47 Download gff for
FMO11483.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dap160-RC | 340..1388 | 9..1044 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:45:15 Download gff for
FMO11483.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dap160-RC | 334..1382 | 9..1044 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:17:02 Download gff for
FMO11483.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dap160-RC | 334..1382 | 9..1044 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:17:02 Download gff for
FMO11483.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 21140569..21141008 | 548..980 | 98 | <- | Minus |
2L | 21141178..21141552 | 173..547 | 100 | <- | Minus |
2L | 21141625..21141788 | 9..172 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:45:15 Download gff for
FMO11483.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 21140569..21141008 | 548..980 | 98 | <- | Minus |
arm_2L | 21141178..21141552 | 173..547 | 100 | <- | Minus |
arm_2L | 21141625..21141788 | 9..172 | 99 | | Minus |