FMO11484.5prime Sequence
1127 bp (954 high quality bases) assembled on 2011-12-09
> FMO11484.5prime
CAGTCGACATGGCGGATGGTGGGCATTCATTCGTGAAGAAGACATTTCAT
AAGCCAACATACTGTCACCACTGCTCGGATCTGCTCTGGGGCCTCATCCA
GCAGGGATATATCTGCGAAGTTTGCAACTTTATCATTCACGAACGATGTG
TCAGCAGCGTGGTAACGCCCTGTTCCGGCATCGCTCCATGTATTATAAAG
AATCCCGTTGCCCATTGTTGGTCCGAGCCAACTCATCACAAGAGAAAATT
CTGCACAGTTTGCCGTAAGCGATTGGATGAAACGCCAGCGGTGCATTGTT
TAGTCTGCGAATATTTCGCGCATATTGAGTGCCAAGATTTTGCCGTGCCC
GATTGCACCGAGAATGCCACGTATGTGCCAGGCAAGGAGCTGCTTAATGT
GAAGCATCAGCATCACTGGCGAGAGGGCAATCTTCCATCAACGTCCAAAT
GCGCTTACTGCAAGAAAACCTGTTGGTCCTCGGAATGTCTCACTGGCTAT
CGTTGCGAGTGGTGTGGCATGACGACCCATGCCGGATGTCGCATGTACCT
GCCAACCGAATGTAATTTTGGTATTCTACAACCTATCTACTTACCTCCGC
ACTCAGTCTCGATTCCGCGCACCGAGGTGCCCATCGAGGCCATCATCGGC
GTCCAGGTCAAATCGAAGACTTCGCTCGTGCGCGACTACTCGTGTCCACG
CAGCATATCCGAGGAGTTCAGCAGCGGCGACACACCTCGTTTCAAGGACG
AGGAGTCGGCCAGCAAGGCCGAATTCGGGACATGGACCCAGCAGTGGTGG
TGCAGGTGGTGGAGGCGGAAGTGGCGGTGCTGGAGGCTCATCCGCAGCTG
GTGCATCGGCATCGGCTGCCGGGTGGCTCCTCCGGGCACTATAGACCCGA
TTCCGGTTCCGGTCACAAATTCGGATAAATTCGGAGAAGGATCGCGAGAA
GAAGGAAAAGGAGCGCGAGGAAAAGGATAATGAATATGATCAAGTGTTCG
ATGGCAACAACTCATTTCCGACTGCCAGCAGTACCCGCTTGATCATCGTG
GCAGGTCTACTTATACGCTGGGAGCACTGCTGACACCGCGCCTTGCGGGG
TCATTCCCAATATACGCCGATCGAAGC
FMO11484.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:14:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31140-RF | 4144 | CG31140-RF | 846..1920 | 9..1091 | 4960 | 98 | Plus |
| CG31140-RB | 5330 | CG31140-RB | 836..1910 | 9..1091 | 4960 | 98 | Plus |
| CG31140-RH | 5721 | CG31140-RH | 836..1524 | 9..697 | 3445 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:14:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23976166..23976444 | 697..979 | 1200 | 98.2 | Plus |
| 3R | 32079331 | 3R | 23973353..23973554 | 495..696 | 1010 | 100 | Plus |
| 3R | 32079331 | 3R | 23966591..23966702 | 9..120 | 560 | 100 | Plus |
| 3R | 32079331 | 3R | 23973033..23973141 | 302..410 | 545 | 100 | Plus |
| 3R | 32079331 | 3R | 23972607..23972711 | 199..303 | 525 | 100 | Plus |
| 3R | 32079331 | 3R | 23973205..23973293 | 408..496 | 445 | 100 | Plus |
| 3R | 32079331 | 3R | 23972446..23972527 | 119..200 | 410 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:14:11 has no hits.
FMO11484.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-09 10:05:48 Download gff for
FMO11484.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31140-RD | 828..1526 | 1..696 | 98 | -> | Plus |
| CG31140-RD | 3051..3400 | 697..1054 | 95 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:45:18 Download gff for
FMO11484.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31140-RB | 828..1873 | 1..1054 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:17:05 Download gff for
FMO11484.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31140-RB | 828..1873 | 1..1054 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:17:05 Download gff for
FMO11484.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23966583..23966702 | 1..120 | 96 | -> | Plus |
| 3R | 23972448..23972527 | 121..200 | 100 | -> | Plus |
| 3R | 23972609..23972711 | 201..303 | 100 | -> | Plus |
| 3R | 23973035..23973141 | 304..410 | 100 | -> | Plus |
| 3R | 23973208..23973292 | 411..495 | 100 | -> | Plus |
| 3R | 23973354..23973554 | 496..696 | 100 | -> | Plus |
| 3R | 23976166..23976447 | 697..985 | 96 | -> | Plus |
| 3R | 23976506..23976571 | 986..1054 | 91 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:45:18 Download gff for
FMO11484.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19792305..19792424 | 1..120 | 96 | -> | Plus |
| arm_3R | 19798170..19798249 | 121..200 | 100 | -> | Plus |
| arm_3R | 19798331..19798433 | 201..303 | 100 | -> | Plus |
| arm_3R | 19798757..19798863 | 304..410 | 100 | -> | Plus |
| arm_3R | 19798930..19799014 | 411..495 | 100 | -> | Plus |
| arm_3R | 19799076..19799276 | 496..696 | 100 | -> | Plus |
| arm_3R | 19801888..19802169 | 697..985 | 96 | -> | Plus |
| arm_3R | 19802228..19802293 | 986..1054 | 91 | | Plus |
