Clone FMO11485 Report

Search the DGRC for FMO11485

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:114
Well:85
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG6043-RM
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11485.5prime Sequence

353 bp (353 high quality bases) assembled on 2011-12-09

> FMO11485.5prime
CAGTCGACATGGCCACCTCAACGCTGCAATCTCCGTCGCCGTCGCCATCA
AACGCCTCCGTGTCATCCAAGAATCCGCAGCTGAAGCGCGTAGTGTACTC
CAAATATCGGGAACTACTTGGTTCTTATAATGATAAGGCCAATGCCATCA
TCGACACTCTGCCCGCATATATGGTTCGTCAGGATCGCGGATTTCAGTTG
TCGGAGCTGCCCGTGAACGGGGATGCCAATCGCAACGGCCTGGAATTGTC
GTATGGACAGCGCGGAGGAGGCGGATCCGGAAACGGTGGCTACGAGGCGC
CCGCGTGCGTGCAGAACGCGATGATGACAAAAGACAAGAAGCCCTTCACC
TAC

FMO11485.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:14:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG44085-RO 8804 CG44085-RO 257..601 9..353 1725 100 Plus
CG44085-RN 3940 CG44085-RN 257..601 9..353 1725 100 Plus
CG44085-RL 3418 CG44085-RL 257..601 9..353 1725 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:14:19
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13267731..13267975 9..253 1225 100 Plus
2L 23513712 2L 13271296..13271398 251..353 515 100 Plus
Blast to na_te.dros performed on 2014-11-27 20:14:21 has no hits.

FMO11485.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-09 10:05:48 Download gff for FMO11485.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6043-RI 491..844 1..353 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:45:23 Download gff for FMO11485.5prime
Subject Subject Range Query Range Percent Splice Strand
CG44085-RL 248..601 1..353 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:17:08 Download gff for FMO11485.5prime
Subject Subject Range Query Range Percent Splice Strand
CG44085-RL 248..601 1..353 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:17:08 Download gff for FMO11485.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 13267722..13267972 1..250 98 -> Plus
2L 13271296..13271398 251..353 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:45:23 Download gff for FMO11485.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13267722..13267972 1..250 98 -> Plus
arm_2L 13271296..13271398 251..353 100   Plus