FMO11487.5prime Sequence
1139 bp (1022 high quality bases) assembled on 2011-12-09
> FMO11487.5prime
CAGTCGACATGGAAGACAATAACACGAGCAGCAGTGCGGGCGGTGCGTCC
ATCAAACACGAGGATCCATCGGTGACACTCACAATAAGGCTGATTATGCA
AGGAAAGGAGGTTGGTAGTATTATTGGTAAAAAGGGTGAAATTGTCAACA
GATTTCGTGAAGAGTCTGGTGCCAAAATCAACATTTCGGATGGCTCATGC
CCGGAACGTATTGTGACTGTGTCTGGTACAACTAATGCAATCTTTTCGGC
ATTCACGCTCATTACAAAGAAGTTCGAAGAGTTCAATGATGTAGGCAAAG
TTGGTAAAACTCAAATACCCATTCGATTGATTGTGCCCGCCAGTCAATGT
GGATCGTTAATTGGCAAGAGTGGTTCAAAGATCAAGGAAATTCGTCAGAC
CACGGGCTGCTCCATCCAAGTGGCCAGTGAAATGCTACCCAATTCCACAG
AGCGGGCGGTTACCTTGAGCGGCAGTGCCGAGCAGATCACCCAGTGCATC
TATCAGATATGTCTTGTCATGTTGGAGTCCCCGCCACGCGGTGCCACCAT
CCCGTACCGACCAAAACCACAGGTTACTGGCCCCGTCATCCTGGCCAATG
GACAGGCTTTCACCATCCAAGGAAACTACGCGGTGCCCACACAAGAGGTG
GCCAAGAACCCGCTGGCCAGTCTGGCCGCCTTGGGCCTGGCTGGGATGAA
TCCGGCCAGCACTGGGGGGCATCAACCACACAGGTGAGTTGAGCGCTTCT
GCGGCCAGATGCCAGACAGATTTCCAATCTAATCTAGGCTCTGCCCCAGC
AGCCTTGGCTGCACTGGCCGGGTCGCAACTGCGTACAGCGAATCCCGCGA
ACCGAGCCCAGCAGCAGCAGCACGAGATGACCGTCTCAAACGACCTGATT
GGCTGCATCATCGGCAAGGTGGCACAAGATCGCCGAGATTCGCCAATATC
CCGGCGCCATGATCCGGGATCTTCAACTGGGAGGAGCCGCGAGGGCCGGC
AATACGGACGCACCATCACCATCAGTGGGCAAATCCGGGATTCGGGTGGC
CCTGGACCAATACTTAATCAAATATGAGTGTGAGCTGCCGAAAGCCATCT
CCTGGAGCAGCCAGTCCCAGACGAACGAAGGGTGCTGCC
FMO11487.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:14:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mub-RE | 3441 | CG7437-RE | 841..1969 | 8..1139 | 5040 | 97.2 | Plus |
| mub-RF | 3553 | CG7437-RF | 953..2081 | 8..1139 | 5040 | 97.2 | Plus |
| mub-RA | 3437 | CG7437-RA | 841..1917 | 8..1078 | 4775 | 96.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:14:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21920901..21921279 | 646..1025 | 1460 | 96.3 | Plus |
| 3L | 28110227 | 3L | 21915260..21915424 | 363..527 | 810 | 99.4 | Plus |
| 3L | 28110227 | 3L | 21915534..21915657 | 526..649 | 620 | 100 | Plus |
| 3L | 28110227 | 3L | 21914891..21915009 | 163..281 | 595 | 100 | Plus |
| 3L | 28110227 | 3L | 21907821..21907921 | 8..108 | 505 | 100 | Plus |
| 3L | 28110227 | 3L | 21915112..21915200 | 280..368 | 430 | 98.9 | Plus |
| 3L | 28110227 | 3L | 21914774..21914832 | 106..164 | 295 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:14:35 has no hits.
FMO11487.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-09 10:05:50 Download gff for
FMO11487.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mub-RF | 953..2074 | 8..1131 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:45:29 Download gff for
FMO11487.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mub-RF | 953..2074 | 8..1131 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:17:16 Download gff for
FMO11487.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mub-RF | 953..2074 | 8..1131 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:17:16 Download gff for
FMO11487.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21907821..21907920 | 8..107 | 100 | -> | Plus |
| 3L | 21914776..21914832 | 108..164 | 100 | -> | Plus |
| 3L | 21914893..21915009 | 165..281 | 100 | -> | Plus |
| 3L | 21915114..21915195 | 282..363 | 100 | -> | Plus |
| 3L | 21915261..21915424 | 364..527 | 99 | -> | Plus |
| 3L | 21915536..21915655 | 528..647 | 100 | -> | Plus |
| 3L | 21920903..21921327 | 648..1078 | 95 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:45:29 Download gff for
FMO11487.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21900921..21901020 | 8..107 | 100 | -> | Plus |
| arm_3L | 21907876..21907932 | 108..164 | 100 | -> | Plus |
| arm_3L | 21907993..21908109 | 165..281 | 100 | -> | Plus |
| arm_3L | 21908214..21908295 | 282..363 | 100 | -> | Plus |
| arm_3L | 21908361..21908524 | 364..527 | 99 | -> | Plus |
| arm_3L | 21908636..21908755 | 528..647 | 100 | -> | Plus |
| arm_3L | 21914003..21914427 | 648..1078 | 95 | -> | Plus |
