FMO11491.5prime Sequence
918 bp (918 high quality bases) assembled on 2011-12-09
> FMO11491.5prime
CAGTCGACATGAATATAGAAAAAACTATAACCTTTTCAGATCCGAAAATG
TCTGGATTGCCCACTGCCAGCATAACCGAGTGCACGGAGGACAGTAATAC
GCCAAAGCTGGCGCCGGATAAGCCATTATTGCCGGAAGAATGCGTCTCTC
CGGAGCCCAGTCGCAACCGGGAGCACTGCGATCCGCTGGACACGTCGCTG
GTGAACACCAAGCAGCGGAGATCGCGGACGAACTTCACCCTGGACCAGCT
GAACGAGCTGGAGCGACTGTTCGAGGAGACCCACTATCCAGATGCCTTCA
TGCGCGAGGAACTGAGTCAGCGACTGGGCCTCAGCGAAGCTAGAGTGCAG
GTTTGGTTTCAAAATAGAAGGGCGAAATGTAGAAAGCACGAAAACCAAAT
GCACAAAGGATTCCTCGTGGGCAGCCGGAGTCCGCCGATTGCCACTCCGC
TGGAACCATGTCGTGTGGCTCCCTACGTCAGCCTGGCCGCCCTTCGCAGC
TCATCCGTTCCATCCCATCCTGCCGCAGCGACCAGCTCGAATCCCCAGGC
ACCCGGTGTCTCCGGAACCAGCAGTTCCGGCAAGGTGGTCACCGTGGACT
CACCACATAATCACAATCCGGCGATATCGCGCTCGGCTATCAAACAGTTT
TCCAGCACCGTGGCAGCAGCCGCCGCCTTTTCCGCTTTCGATCCGGCCAT
TATTTCGGTGGCAGCTCATCAGTACGCAGCTGCTATAACTAATGGAACCG
TGCCGGCTGGATTGTTTTCTGTGCCCCAGTACTCCATAAATCTGGCCGCC
TTCGCCGCCGCCCACAGCAAGAGCTCTTCGATAGCCGATCTCCGGATGAA
GGCCAAGAAGCACTCGGAATCGTTGGGTCTGCAGGCGGACATGGTGCTCG
CAAGCTTTTCTAGACCAT
FMO11491.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:14:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34367-RB | 1095 | CG34367-RB | 36..926 | 9..899 | 4455 | 100 | Plus |
| CG34367-RC | 1703 | CG34367-RC | 673..1534 | 38..899 | 4310 | 100 | Plus |
| CG34367-RE | 1037 | CG34367-RE | 376..868 | 407..899 | 2465 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:14:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10351713..10352056 | 352..9 | 1720 | 100 | Minus |
| 2L | 23513712 | 2L | 10348660..10348977 | 722..405 | 1590 | 100 | Minus |
| 2L | 23513712 | 2L | 10348020..10348200 | 899..719 | 905 | 100 | Minus |
| 2L | 23513712 | 2L | 10350719..10350782 | 409..346 | 320 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:14:53 has no hits.
FMO11491.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-09 10:05:52 Download gff for
FMO11491.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34367-RB | 27..926 | 1..899 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:45:41 Download gff for
FMO11491.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34367-RB | 27..926 | 1..899 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:17:23 Download gff for
FMO11491.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34367-RB | 27..926 | 1..899 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:17:23 Download gff for
FMO11491.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10348660..10348973 | 409..722 | 100 | <- | Minus |
| 2L | 10350720..10350777 | 351..408 | 100 | <- | Minus |
| 2L | 10348020..10348196 | 723..899 | 100 | <- | Minus |
| 2L | 10351715..10352061 | 1..350 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:45:41 Download gff for
FMO11491.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10348020..10348196 | 723..899 | 100 | <- | Minus |
| arm_2L | 10348660..10348973 | 409..722 | 100 | <- | Minus |
| arm_2L | 10350720..10350777 | 351..408 | 100 | <- | Minus |
| arm_2L | 10351715..10352061 | 1..350 | 98 | | Minus |
