FMO11493.5prime Sequence
1119 bp (996 high quality bases) assembled on 2011-12-09
> FMO11493.5prime
CAGTCGACATGAAGTATTCAACAAGTCGAATAAACATTCTGTGCCTGCTG
GGATTGTGCCTACTGCTTTTTAAAACAGCACCCACAGAGGCACAAAACAA
ACGAACCTCGCGCGTAACCAGCTCCCGCAGCTTCGGGACCAACATCAAGA
CCGACACTTCCAATGGCCCTAGCTTCGACTGCCCTGAGGAGTTCGGATAC
TATCCGCACCCATCGGATTGCACCCAATACTACGTGTGCGTCTTTGGAGG
AGCGCTGCTTGAAAGTTGCACTGGCGGCTTGATGTACTCGCACGACCTGC
AGACCTGCGACTGGCCGCGAAACGTCGGCTGCGAGTTGGCGGACACATCC
TCCGAGCGCAACCTTGCACAAAGCCAGGTCCAGAGGCAAAGAGAACCCCA
TGCACAGCACGTGCCAAGCCGAGTACGTTTTGGAGCCGCTTTCAGCAGTC
AGGGTGGCACACAGAAGACGGCCACAGTGCCGCCACAGTACCATCGTTCT
CCACCACAGGTAATACAGGCGCAGGTGCAGAATATACCTCCTCCCCCACC
GGAGCTGCGAGTGTCACCAAACCCGGTAATCACGTCGCGTGGTCAACCAA
AACCGCTGATCGACTCCCAGGAGGACATTGCAAAGCTGTATGCTGATGCG
CAGGAATCATTGCCGCCTGTGGAAGAAGAGGAGTCCGACCGTCAGCAGAG
AGTGTATCGAGGCCAACCCAGTACCGTTAGTCAAGTTCAACGCGATCGCG
ATGGTATTATTCACCAAGCTAGTATTAATTCTATTCCTCAACTGGAAAAA
TCGGATCTTACGCTTTTGGAACCGCCTATAGAGTTGAGTCGCCTTCACCG
TCATCGCTAGGGACACCGCAACCCGCTAATATATTTGTACAGCCCACGTC
AGCAGCCCCGCCGCACAGTCAGAGCCCAATCGTAACTACTACAATGCATC
TACATTTAATCATGGGGGCAGCTACCTATCAACAGCAGCAAAACCAACAC
CACAGGCTCCAACCAACACATTCCTACAGCGCAACCACCAGACCACATCA
GCAGCAGGACAAGCCCCACACATTCTAATTGAAACATCTCTATATCCGTT
TCGACGCACAAATACCGAA
FMO11493.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:15:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cda5-RE | 4347 | CG31973-RE | 106..1178 | 9..1075 | 5005 | 98.3 | Plus |
| Cda5-RI | 7266 | CG31973-RI | 595..1667 | 9..1075 | 5005 | 98.3 | Plus |
| Cda5-RH | 3917 | CG31973-RH | 123..1195 | 9..1075 | 5005 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:15:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 39301..39859 | 635..77 | 2795 | 100 | Minus |
| 2L | 23513712 | 2L | 38535..38733 | 831..634 | 945 | 99.5 | Minus |
| 2L | 23513712 | 2L | 34972..35214 | 1068..830 | 755 | 93 | Minus |
| 2L | 23513712 | 2L | 58081..58150 | 78..9 | 350 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:15:15 has no hits.
FMO11493.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-09 10:05:53 Download gff for
FMO11493.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cda5-RB | 79..1164 | 1..1082 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:45:51 Download gff for
FMO11493.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cda5-RH | 116..1201 | 1..1082 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:17:32 Download gff for
FMO11493.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cda5-RH | 116..1201 | 1..1082 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:17:32 Download gff for
FMO11493.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 34958..35212 | 832..1082 | 92 | <- | Minus |
| 2L | 38535..38731 | 636..831 | 99 | <- | Minus |
| 2L | 39301..39857 | 79..635 | 100 | <- | Minus |
| 2L | 58081..58157 | 1..78 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:45:51 Download gff for
FMO11493.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 34958..35212 | 832..1082 | 92 | <- | Minus |
| arm_2L | 38535..38731 | 636..831 | 99 | <- | Minus |
| arm_2L | 39301..39857 | 79..635 | 100 | <- | Minus |
| arm_2L | 58081..58157 | 1..78 | 94 | | Minus |
