FMO11495.5prime Sequence
1099 bp (1014 high quality bases) assembled on 2011-12-09
> FMO11495.5prime
CAGTCGACATGGTTTCGTTACAGAGTGGAAATCTAAAACTTAATAAAGTT
GATATTTCTCTGCAAGACTGTCTTGCGTGTTCTGGTTGCATCACTTCAGC
TGAAGAAGTCCTTATCACGCAGCAGAGCCGAGAAGAGTTGCTTAAGGTCC
TTCAAGAGAATTCAAAGAATAAGGCCTCTGAAGACTGGGATAACGTGCGT
ACGATCGTGTTCACCCTTGCCACCCAGCCTATACTAAGCTTAGCCTATCG
CTATCAGATAGGTGTGGAGGATGCTGCCCGTCATCTTAATGGGTATTTTC
GCAGTTTGGGTGCCGACTATGTTTTGTCCACTAAGGTGGCGGACGATATT
GCGCTGCTCGAATGTCGTCAAGAATTTGTAGATAGGTACCGCGAAAATGA
GAACTTGACCATGCTTAGCTCCTCTTGTCCGGGGTGGGTTTGTTACGCGG
AGAAAACACACGGAAACTTCTTATTGCCTTACGTTTCCACGACCCGATCT
CCTCAGCAAATAATGGGAGTGCTTGTGAAGCAAATCCTTGCCGATAAGAT
GAATGTTCCTGCGTCACGAATCTACCATGTGACCGTGATGCCTTGCTACG
ACAAGAAGCTTGAGGCCTCTCGAGAGGACTTTTTCAGCAAGGCAAATAAC
TCACGCGACGTAGACTGTGTAATCACTTCAGTTGAGGTGGAACAGTTGCT
TAGTGAGGCTCAGCAGCCGCTGTCGCAGTACGATCTCCTTGATTTAGACT
GGCCATGGTCTAATGTACGCCCAGAATTCATGGTATGGGCTCACGAGAAG
ACGCTATCTGGCGGTTACGCAGAACACATATTTAAGTACGCCGCAAAACA
TATTTTCAACGAAGATTTAAAAACAGAGTTGGAATTCAAACAGCTCAAAA
ACCGCGACTTTAGAGAATTATACTTAAACAGAATGCAAACTGTCCTGAAA
TTTGCATTGCTAACCGTTTCCCGGAACAAACAAACCTTGTACCAAAAACT
GAAGCGTGAAAAGGTATCAAATTACCACTTGTGAGTATGACTGTCCTTCG
GCCTGTATAACGAAGAACACAATACGTTCCCACTACGGAACGCAGGTCG
FMO11495.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:15:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17683-RD | 2403 | CG17683-RD | 283..1370 | 9..1086 | 4935 | 97.8 | Plus |
| CG17683-RC | 1785 | CG17683-RC | 231..1305 | 22..1086 | 4870 | 97.8 | Plus |
| CG17683-RA | 1696 | CG17683-RA | 243..1317 | 22..1086 | 4870 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:15:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 4131307..4131979 | 9..681 | 3365 | 100 | Plus |
| 2R | 25286936 | 2R | 4132034..4132388 | 679..1030 | 1460 | 96.6 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:15:31 has no hits.
FMO11495.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-09 10:05:54 Download gff for
FMO11495.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17683-RD | 268..1305 | 1..1040 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:45:59 Download gff for
FMO11495.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17683-RD | 276..1313 | 1..1040 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:17:38 Download gff for
FMO11495.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17683-RD | 276..1313 | 1..1040 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:17:38 Download gff for
FMO11495.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 4132037..4132394 | 682..1040 | 96 | | Plus |
| 2R | 4131300..4131979 | 1..681 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:45:59 Download gff for
FMO11495.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18805..19484 | 1..681 | 99 | -> | Plus |
| arm_2R | 19542..19899 | 682..1040 | 96 | | Plus |
